SCN Proteipedia

Hg_chrom2_TN10mRNA_3780

Organism: Heterodera glycines Gene Locus: chr2:8335289-8340996 Feature type: polypeptide

Protein Sequence

Length: 1,145

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.762	0.955	0.953	0.632	0.946	1.299	0.707	1.31	1.009	1.428	0.556	1.079	1.14	1.209	1.23	1.46	0.83	0.992	1.075	0.796	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3593	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.283	0.302	0.013	0.651	0.304	0.462	0.474	0.024	0.401	0.085

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007060	1.000	1.000	Hsc_gene_4853.t1	Hsc_gene_4853.t1	—	O00562.4 Membrane-associated phosphatidylinositol transfer protein 1 [Homo sapiens]	KAF7635329.1 DDHD domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005548\|GO:0015914\|GO:0046872	GO:0005575_0.840\|GO:0008150_0.839\|GO:0110165_0.834\|GO:0009987_0.795\|GO:0003674_0.766\|GO:0005488_0.698\|GO:0005622_0.661\|GO:0071840_0.652\|GO:0016043_0.649\|GO:0051179_0.637\|GO:0051234_0.625\|GO:0006810_0.620\|GO:0016020_0.570\|GO:0033036_0.562\|GO:0005737_0.557\|GO:0008289_0.551\|GO:0005543_0.550\|GO:0061024_0.550\|GO:0035091_0.546\|GO:0006869_0.532\|GO:0010876_0.532\|GO:0015748_0.532\|GO:0015914_0.532\|GO:0120009_0.532\|GO:0005215_0.525\|GO:0005319_0.516\|GO:0005548_0.516\|GO:0008526_0.516\|GO:0120013_0.516\|GO:0120014_0.516\|GO:0043226_0.505	IPR001666+1-251_1-916_16-35_85-105_111-126_198-213_219-238+\|IPR004177+646-721_646-786+\|IPR023214+920-1052+\|IPR023393+1-267+\|IPR031315+931-1061+\|IPR036412+928-1044+	SM00775+931-1061+\|SM01127+646-786+	PF02121+1-251+Phosphatidylinositol_transfer_protein\|PF02862+646-721+DDHD_domain	G3DSA:3.30.530.20:FF:000028+1-266+Phosphatidylinositol_transfer_protein_5\|G3DSA:3.40.50.1000:FF:000173+928-1042+Membrane-associated_phosphatidylinositol_transfer_protein_2	PTHR10658+1-916+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	246-326;523-573;1085-1145	3.000	1-245;327-522;574-1084	9jzp_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.757	127527.520	6.558	1.000	23.231	10.830	47.686	52.314	12.314	10.917	51.790

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2774.342	4210.083	3365.933	2350.625	1762.564	2000.491	3084.563	2452.399	3635.492	2201.132	2815.857

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.552	-0.978	-0.409	-0.447	0.197	0.636	0.189	0.474	—	—	—	—	—

No JSON data available for plots.

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