Hg_chrom2_TN10mRNA_3782
Organism: Heterodera glycines Gene Locus: chr2:8345046-8347441 Feature type: polypeptideProtein Sequence
Length: 481
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.58 | 1.209 | 0.907 | 0.287 | 1.455 | 1.386 | 0.743 | 0.832 | 0.878 | 1.264 | 1.26 | 1.223 | 1.617 | 1.079 | 1.57 | 0.832 | 0.716 | 0.788 | 0.96 | 0.734 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3595
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
endoplasmic_reticulum
|
nucleus
|
KRRR,RKRKGAGGNDVGKRVKDK,KRKGAGGNDVGKRVKDKLK
|
— | — | — | — | — |
0.559
|
0.481
|
1.000
|
— |
0.390
|
0.471
|
0.056
|
0.187
|
0.861
|
0.115
|
0.190
|
0.047
|
0.044
|
0.007
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007062
|
1.000
|
1.000
|
Hsc_gene_4855.t1
|
Hsc_gene_4855.t1
|
— |
Q80TN4.2 DnaJ homolog subfamily C member 16 [Mus musculus]
|
KAI1727496.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.859|GO:0110165_0.859|GO:0005622_0.783|GO:0008150_0.757|GO:0016020_0.750|GO:0043226_0.713|GO:0043229_0.693|GO:0005737_0.687|GO:0009987_0.656|GO:0043227_0.651|GO:0043231_0.640|GO:0003674_0.638|GO:0005488_0.561|GO:0005515_0.526
|
IPR001623+33-90_34-87_34-95_34-98_36-54_54-69_70-90_90-109+|IPR036869+32-113_32-139+|IPR039370+354-397+
|
SM00271+33-90+
|
PF00226+34-95+DnaJ_domain
|
— |
PTHR10351+354-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
169-212;308-358;394-481
|
3.000
|
1-168;213-307;359-393
|
2cug_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
55632.350
|
9.686
|
15.000
|
31.393
|
11.227
|
52.183
|
47.817
|
17.672
|
13.721
|
43.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1425.501
|
1494.664
|
1638.597
|
1278.864
|
1427.202
|
1596.174
|
1322.773
|
1836.835
|
1914.739
|
827.349
|
1293.373
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.362
|
-0.249
|
0.126
|
0.176
|
-0.261
|
— |
-0.331
|
— | — | — | — | — |