Hg_chrom2_TN10mRNA_3783
Organism: Heterodera glycines Gene Locus: chr2:8347413-8350584 Feature type: polypeptideProtein Sequence
Length: 466
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.148 | 0.649 | 1.014 | 0.518 | 0.858 | 0.385 | 1.022 | 3.648 | 1.24 | 1.45 | 0.78 | 1.262 | 1.669 | 0.867 | 0.613 | 0.95 | 0.774 | 1.008 | 0.825 | 0.442 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.766
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.080
|
0.121
|
0.013
|
0.075
|
0.634
|
0.480
|
0.360
|
0.058
|
0.343
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007063
|
1.000
|
1.000
|
Hsc_gene_4856.t1
|
Hsc_gene_4856.t1
|
— |
Q9XTQ7.2 Zinc transporter zipt-7.2 [Caenorhabditis elegans]
|
XP_024508578.1 Zinc transporter SLC39A7 [Strongyloides ratti];CEF69378.1 Zinc transporter SLC39A7 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.872|GO:0009987_0.735|GO:0005575_0.733|GO:0110165_0.733|GO:0003674_0.697|GO:0016020_0.686|GO:0071944_0.627|GO:0006810_0.620|GO:0051179_0.620|GO:0051234_0.620|GO:0005886_0.605|GO:0055085_0.548
|
IPR003689+152-463+
|
— |
PF02535+152-463+ZIP_Zinc_transporter
|
— |
PTHR16950+41-465+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
69-129;261-308
|
3.000
|
1-68;130-260;309-466
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
50831.210
|
6.753
|
5.000
|
26.180
|
15.880
|
41.845
|
58.155
|
15.451
|
10.730
|
50.858
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1937.599
|
1940.487
|
1105.364
|
2001.322
|
2716.580
|
2820.013
|
2060.818
|
1688.289
|
1695.191
|
1830.777
|
1772.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.042
|
-0.093
|
0.965
|
0.409
|
— |
-0.443
|
-0.843
|
0.429
|
— | — | — | — | — |
No JSON data available for plots.