Hg_chrom2_TN10mRNA_3784
Organism: Heterodera glycines Gene Locus: chr2:8352465-8354998 Feature type: polypeptideProtein Sequence
Length: 529
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.725 | 0.967 | 0.687 | 1.63 | 1.418 | 1.406 | 0.81 | 1.985 | 0.672 | 1.379 | 0.716 | 0.778 | 1.103 | 1.2 | 1.697 | 0.864 | 0.527 | 0.802 | 1.309 | 0.667 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RIVKRRI,KKETHLIQKNKRKND
|
— | — |
69-103
|
0.994
|
— | — |
0.053
|
— | — |
0.100
|
0.142
|
0.098
|
0.199
|
0.304
|
0.172
|
0.365
|
0.106
|
0.231
|
0.842
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007064
|
1.000
|
1.000
|
Hsc_gene_4857.t1
|
— | — |
Q32L50.2 Somatomedin-B and thrombospondin type-1 domain-containing protein [Bos taurus]
|
KAF7633965.1 SMB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.778|GO:0110165_0.771|GO:0071944_0.635|GO:0008150_0.609|GO:0009987_0.551|GO:0065007_0.548|GO:0050789_0.535|GO:0050794_0.516
|
IPR000884+311-366_314-366+|IPR001212+283-308_287-307_287-315+|IPR036024+283-310+|IPR036383+309-361_311-362+|IPR039942+73-528+|IPR044004+312-364+
|
SM00209+314-366+
|
PF01033+283-308+Somatomedin_B_domain|PF19028+312-364+Spondin-like_TSP1_domain
|
— |
PTHR20920+73-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
60340.660
|
7.809
|
14.500
|
29.301
|
11.909
|
48.204
|
51.796
|
17.013
|
12.287
|
46.503
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1405.568
|
499.897
|
1779.951
|
1228.990
|
1215.999
|
2617.559
|
1308.852
|
712.980
|
1955.519
|
1171.137
|
1507.301
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.604
|
1.161
|
-0.426
|
— |
1.121
|
-0.991
|
-1.982
|
1.018
|
— | — | — | — | — |
No JSON data available for plots.