Hg_chrom2_TN10mRNA_3786
Organism: Heterodera glycines Gene Locus: chr2:8368559-8370700 Feature type: polypeptideProtein Sequence
Length: 350
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 0.93 | 1.091 | 0.394 | 2.19 | 1.245 | 0.544 | 0.714 | 1.46 | 1.12 | 0.996 | 1.176 | 1.746 | 0.714 | 1.341 | 1.306 | 0.422 | 0.909 | 0.0 | 0.252 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3599
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
GKKRKLGKAARKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.933
|
0.128
|
0.027
|
0.342
|
0.009
|
0.014
|
0.037
|
0.008
|
0.012
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007066
|
1.000
|
1.000
|
Hsc_gene_4859.t1
|
Hsc_gene_4859.t1
|
— |
Q23402.1 Protein BCCIP homolog [Caenorhabditis elegans]
|
KAH7730396.1 BCP1 family [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.938|GO:0110165_0.931|GO:0005622_0.890|GO:0043226_0.844|GO:0043229_0.811|GO:0008150_0.781|GO:0009987_0.731|GO:0016020_0.672|GO:0071840_0.611|GO:0005737_0.610|GO:0016043_0.602|GO:0043227_0.592|GO:0006996_0.565|GO:0043231_0.563|GO:0007049_0.531|GO:0022402_0.531|GO:0007010_0.530|GO:0007017_0.530|GO:0000280_0.528|GO:0048285_0.528|GO:0000226_0.524|GO:0000278_0.522|GO:0140014_0.522|GO:1903047_0.522|GO:0043228_0.516|GO:0043232_0.516|GO:0007051_0.515|GO:0007052_0.510|GO:0034453_0.510|GO:1902850_0.510
|
IPR025602+15-342_78-289+
|
— |
PF13862+78-289+BCCIP
|
— |
PTHR13261+15-342+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87
|
1.000
|
88-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
39835.810
|
4.548
|
-18.500
|
33.714
|
8.571
|
54.286
|
45.714
|
14.571
|
19.143
|
43.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1060.760
|
494.154
|
785.354
|
1243.553
|
1316.716
|
1095.019
|
1148.406
|
628.090
|
851.086
|
1485.775
|
1213.765
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.439
|
1.194
|
0.771
|
— |
-0.251
|
— |
-0.907
|
1.013
|
— | — | — | — | — |
No JSON data available for plots.