Hg_chrom2_TN10mRNA_3788
Organism: Heterodera glycines Gene Locus: chr2:8372934-8374039 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.955 | 0.786 | 0.791 | 0.167 | 1.61 | 0.867 | 0.805 | 0.725 | 1.181 | 1.24 | 1.098 | 1.989 | 1.074 | 0.743 | 1.577 | 0.897 | 0.95 | 1.025 | 0.743 | 0.568 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3601
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.147
|
0.811
|
0.029
|
0.375
|
0.013
|
0.024
|
0.016
|
0.048
|
0.041
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007068
|
1.000
|
1.000
|
Hsc_gene_4861.t1
|
Hsc_gene_4861.t1
|
— |
Q9D110.2 5-formyltetrahydrofolate cyclo-ligase [Mus musculus]
|
KAI1710194.1 5-formyltetrahydrofolate cyclo-ligase family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.785|GO:0110165_0.775|GO:0005622_0.731|GO:0016020_0.697|GO:0043226_0.679|GO:0005737_0.667|GO:0008150_0.661|GO:0043229_0.661|GO:0043227_0.634|GO:0043231_0.608|GO:0003674_0.579|GO:0009987_0.534
|
IPR002698+7-207_8-205_11-205+|IPR024185+4-207+|IPR037171+11-205+
|
— |
PF01812+11-205+5-formyltetrahydrofolate_cyclo-ligase_family
|
— |
PTHR23407+8-205+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
1wkc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
23300.750
|
8.838
|
3.500
|
30.435
|
8.213
|
49.275
|
50.725
|
16.425
|
14.010
|
45.894
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
295.447
|
535.875
|
572.123
|
165.172
|
153.094
|
218.683
|
263.106
|
591.672
|
268.445
|
153.849
|
202.962
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.134
|
-1.835
|
-1.684
|
— |
0.529
|
0.277
|
1.333
|
-1.027
|
— | — | — | — | — |
No JSON data available for plots.