Hg_chrom2_TN10mRNA_3790
Organism: Heterodera glycines Gene Locus: chr2:8379710-8381462 Feature type: polypeptideProtein Sequence
Length: 351
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 0.928 | 0.725 | 0.393 | 1.757 | 0.584 | 0.814 | 0.712 | 0.633 | 1.348 | 1.899 | 1.173 | 1.029 | 0.657 | 2.093 | 1.14 | 0.607 | 0.82 | 0.438 | 0.335 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3603
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KREEEEGSKRKRKRPWR,KRPKNLRLKPFLYKKR.,KKRKKSIIQQRKEGKKKKP,KRKKSIIQQRKEGKKKKPN,KKEGGAKREEEEGSKRKRK,KRKRKRPWRQMVRNRARRE,RKRKRPWRQMVRNRARRER,KRKRPWRQMVRNRARRERR,RKRPWRQMVRNRARRERRA,KKRKNKLGKEKRAKRRKGL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.923
|
0.040
|
0.023
|
0.251
|
0.057
|
0.003
|
0.033
|
0.003
|
0.024
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007069
|
1.000
|
1.000
|
Hsc_gene_4862.t1
|
— | — |
O44410.1 Ribosomal RNA-processing protein 8 [Caenorhabditis elegans]
|
KAI1726561.1 putative methyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168
|
GO:0005575_0.951|GO:0110165_0.951|GO:0008150_0.934|GO:0005622_0.912|GO:0016020_0.912|GO:0009987_0.910|GO:0043226_0.906|GO:0043229_0.894|GO:0043227_0.857|GO:0003674_0.837|GO:0043231_0.831|GO:0008152_0.798|GO:0009058_0.798|GO:0009059_0.793|GO:0043170_0.793|GO:0044237_0.793|GO:0044249_0.793|GO:0010467_0.784|GO:0044238_0.783|GO:0006139_0.776|GO:0071840_0.771|GO:0034654_0.763|GO:0090304_0.760|GO:0043228_0.755|GO:0043232_0.755|GO:0141187_0.749|GO:0016070_0.747|GO:0032774_0.742|GO:0005634_0.726|GO:0003824_0.673|GO:0016740_0.668|GO:0031974_0.666|GO:0031981_0.666|GO:0043233_0.666|GO:0070013_0.666|GO:0008168_0.654|GO:0008757_0.654|GO:0016741_0.654|GO:0005730_0.605|GO:0032991_0.524
|
IPR007823+7-351_139-351+|IPR029063+173-324_188-351+|IPR042036+137-187+
|
— |
PF05148+139-351+Hypothetical_methyltransferase
|
— |
PTHR12787+7-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-147
|
1.000
|
148-351
|
2zfu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.537
|
40073.100
|
10.728
|
31.500
|
38.746
|
6.838
|
56.695
|
43.305
|
24.217
|
14.530
|
42.735
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1454.817
|
603.715
|
1140.929
|
1149.448
|
1320.992
|
1112.854
|
2397.224
|
1023.491
|
1180.578
|
2198.646
|
1762.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
0.792
|
0.120
|
0.168
|
-0.233
|
1.118
|
— |
1.371
|
— | — | — | — | — |
No JSON data available for plots.