SCN Proteipedia

Hg_chrom2_TN10mRNA_3793

Organism: Heterodera glycines Gene Locus: chr2:8386371-8391543 Feature type: polypeptide

Protein Sequence

Length: 1,111

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.576	1.235	1.342	0.435	1.35	1.154	0.643	1.26	1.08	1.229	1.023	1.853	1.7	0.779	1.121	0.862	0.694	0.982	0.762	0.98	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3605	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.816	0.117	0.006	0.561	0.137	0.166	0.053	0.005	0.118	0.029

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001149	3.000	2.000	Hsc_gene_4864.t1;Hsc_gene_4864.t2	Hsc_gene_4864.t1;Hsc_gene_4864.t2	—	Q93009.2 Ubiquitin carboxyl-terminal hydrolase 7 [Homo sapiens]	KAI1725880.1 ubiquitin carboxyl-terminal hydrolase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004843\|GO:0005515\|GO:0016579	GO:0008150_0.910\|GO:0005575_0.802\|GO:0003674_0.799\|GO:0009987_0.796\|GO:0110165_0.794\|GO:0005622_0.728\|GO:0003824_0.719\|GO:0016020_0.655\|GO:0008152_0.630\|GO:0005737_0.628\|GO:0016787_0.625\|GO:0065007_0.624\|GO:0043226_0.623\|GO:0043229_0.618\|GO:0140096_0.617\|GO:0050789_0.611\|GO:0008233_0.589\|GO:0043227_0.576\|GO:0043170_0.574\|GO:0019783_0.573\|GO:0101005_0.573\|GO:0043231_0.547\|GO:0044238_0.547\|GO:0004843_0.541\|GO:0008234_0.541\|GO:0050794_0.525	IPR001394+190-500+\|IPR002083+33-171_37-171_38-150+\|IPR008974+29-186+\|IPR018200+191-206_428-445+\|IPR024729+651-854+\|IPR028889+190-503+\|IPR029346+879-1094+\|IPR038765+185-528+\|IPR050164+125-556+	SM00061+38-150+	PF00443+190-500+Ubiquitin_carboxyl-terminal_hydrolase\|PF12436+651-854+ICP0-binding_domain_of_Ubiquitin-specific_protease_7\|PF14533+879-1094+Ubiquitin-specific_protease_C-terminal\|PF22486+37-171+MATH_domain	G3DSA:3.90.70.10:FF:000005+187-504+Ubiquitin_carboxyl-terminal_hydrolase_7	PTHR24006+125-556+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-31	1.000	32-1111	2f1z_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.584	128290.460	5.249	-22.000	30.243	12.961	50.315	49.685	14.761	15.482	45.095

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	grey	5065.153	4142.775	4762.685	4429.541	5330.097	4872.060	3807.700	4829.957	9268.471	3143.137	5768.280

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	—	0.235	—	-0.345	—	—	1.455	-0.905	—	—	—

No JSON data available for plots.

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