Hg_chrom2_TN10mRNA_3795
Organism: Heterodera glycines Gene Locus: chr2:8398148-8400193 Feature type: polypeptideProtein Sequence
Length: 497
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.772 | 0.749 | 0.841 | 0.694 | 1.14 | 0.929 | 0.767 | 1.006 | 1.118 | 1.931 | 0.976 | 1.42 | 1.733 | 0.813 | 1.15 | 1.207 | 0.792 | 0.549 | 1.548 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3607
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
PSTKRRI
|
— | — | — | — | — | — |
0.002
|
— | — |
0.227
|
0.127
|
0.009
|
0.268
|
0.775
|
0.369
|
0.526
|
0.036
|
0.200
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007072
|
1.000
|
1.000
|
Hsc_gene_4867.t1
|
Hsc_gene_4867.t1;Hsc_gene_4867.t2
|
— | — |
KHN77792.1 UPF0764 protein C16orf89 -like protein [Toxocara canis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR031751+46-385_54-382+
|
— |
PF15882+54-382+Domain_of_unknown_function_(DUF4735)
|
— |
PTHR33539+46-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-497
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
56147.970
|
8.008
|
8.000
|
25.553
|
11.670
|
45.674
|
54.326
|
14.085
|
11.469
|
44.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1048.205
|
1781.899
|
1789.275
|
950.236
|
675.431
|
771.738
|
604.776
|
1068.506
|
1309.221
|
738.282
|
982.970
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.224
|
-1.044
|
-0.804
|
-0.524
|
0.207
|
-0.342
|
0.364
|
-0.679
|
— | — | — | — | — |
No JSON data available for plots.