Hg_chrom2_TN10mRNA_3797
Organism: Heterodera glycines Gene Locus: chr2:8403651-8407784 Feature type: polypeptideProtein Sequence
Length: 735
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 1.202 | 0.816 | 1.314 | 0.68 | 1.012 | 0.81 | 0.884 | 0.937 | 1.379 | 0.618 | 1.841 | 1.55 | 1.256 | 1.472 | 1.147 | 0.736 | 0.886 | 0.628 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3609
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
64-84
|
0.949
|
6-45
|
0.995
|
— | — |
0.030
|
— | — |
0.065
|
0.053
|
0.052
|
0.152
|
0.193
|
0.359
|
0.332
|
0.013
|
0.269
|
0.730
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007074
|
1.000
|
1.000
|
Hsc_gene_4869.t1
|
Hsc_gene_4869.t1
|
— |
Q20616.1 Peroxidase skpo-1 [Caenorhabditis elegans]
|
KAH7724908.1 Protein F49E12.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.882|GO:0009987_0.825|GO:0005575_0.771|GO:0110165_0.768|GO:0003674_0.689|GO:0050896_0.642|GO:0051716_0.574|GO:0003824_0.550|GO:0042221_0.515
|
IPR003582+83-124_84-123_91-123+|IPR010255+193-732+|IPR019791+185-734_198-708_222-233_266-281_402-420_420-440_445-471_684-698+|IPR037120+175-735+|IPR050702+168-732+
|
SM00254+83-124+
|
PF01549+91-123+ShK_domain-like|PF03098+198-708+Animal_haem_peroxidase
|
— |
PTHR11475+168-732+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
735-735
|
1.000
|
1-734
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.921
|
81725.270
|
8.759
|
26.500
|
21.633
|
10.612
|
43.265
|
56.735
|
13.061
|
8.571
|
52.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1384.811
|
290.623
|
322.600
|
280.935
|
411.628
|
931.212
|
5363.714
|
957.095
|
2407.827
|
1043.502
|
1628.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.186
|
— |
0.520
|
1.191
|
2.537
|
— |
2.630
|
— |
-2.918
|
— | — | — |
No JSON data available for plots.