Hg_chrom2_TN10mRNA_3799
Organism: Heterodera glycines Gene Locus: chr2:8409982-8411226 Feature type: polypeptideProtein Sequence
Length: 225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 2.067 | 0.889 | 0.613 | 1.037 | 1.595 | 0.847 | 0.444 | 1.086 | 0.961 | 1.01 | 0.784 | 1.358 | 0.427 | 1.179 | 0.762 | 0.801 | 1.212 | 0.684 | 0.784 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3611
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
lysosome_vacuole
|
— |
KKQNANGRRNANKNKRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.227
|
0.143
|
0.025
|
0.422
|
0.254
|
0.565
|
0.534
|
0.076
|
0.395
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007076
|
1.000
|
1.000
|
Hsc_gene_4871.t1
|
Hsc_gene_4871.t1
|
— |
Q15771.2 Ras-related protein Rab-30 [Homo sapiens]
|
KAK6100778.1 Ras-related protein Rab-30 [Brugia pahangi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.957|GO:0110165_0.949|GO:0005622_0.799|GO:0016020_0.798|GO:0071944_0.772|GO:0005886_0.749|GO:0008150_0.741|GO:0043226_0.738|GO:0005737_0.733|GO:0043229_0.693|GO:0043227_0.664|GO:0009987_0.650|GO:0043231_0.605|GO:0005773_0.577|GO:0051179_0.549|GO:0012505_0.547|GO:0051234_0.540|GO:0006810_0.539|GO:0031982_0.523
|
IPR001806+1-206_9-169_10-172+|IPR005225+7-165+|IPR027417+1-200_3-187+
|
SM00173+5-172+|SM00174+10-172+|SM00175+8-172+|SM00176+13-218+
|
PF00071+9-169+Ras_family
|
G3DSA:3.40.50.300:FF:000586+1-200+Rab_family_GTPase
|
PTHR47978+3-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-225
|
1.000
|
1-163
|
2ew1_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
25059.260
|
8.463
|
4.000
|
24.444
|
9.333
|
49.778
|
50.222
|
13.333
|
11.111
|
52.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
paleturquoise
|
611.918
|
896.395
|
526.472
|
546.044
|
536.310
|
503.442
|
544.129
|
601.641
|
807.714
|
513.445
|
639.560
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.997
|
-0.852
|
0.161
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.