SCN Proteipedia

Hg_chrom2_TN10mRNA_3807

Organism: Heterodera glycines Gene Locus: chr2:8425310-8428758 Feature type: polypeptide

Protein Sequence

Length: 631

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.829	0.811	0.432	0.765	1.426	0.853	0.641	1.347	1.338	1.049	0.96	1.864	1.541	0.914	1.261	1.517	0.727	0.864	1.219	0.792	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3616	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.977

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKRP,RKSLQGKPRAISAAKERRG,RHKKRKEMEFRKSLQGKPRAISAAKERR	45-67	0.912	53-79	0.999	—	—	0.000	—	—	0.119	0.073	0.005	0.191	0.193	0.226	0.215	0.003	0.883	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000536	4.000	3.000	Hsc_gene_4876.t1;Hsc_gene_4876.t2;Hsc_gene_4876.t3	Hsc_gene_4876.t1;Hsc_gene_4876.t2;Hsc_gene_4876.t3	—	Q19084.3 Tyramine receptor tyra-2 [Caenorhabditis elegans]	KAI6235579.1 Tyra-2 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.944\|GO:0009987_0.892\|GO:0065007_0.840\|GO:0005575_0.820\|GO:0110165_0.820\|GO:0050789_0.819\|GO:0050794_0.796\|GO:0003674_0.767\|GO:0007154_0.716\|GO:0050896_0.715\|GO:0023052_0.709\|GO:0016020_0.698\|GO:0051716_0.689\|GO:0005886_0.662\|GO:0071944_0.662\|GO:0007165_0.633\|GO:0005622_0.614\|GO:0005488_0.599\|GO:0007186_0.560\|GO:0060089_0.538\|GO:0038023_0.532	IPR000276+77-101_93-587_110-131_155-177_161-177_191-212_241-264_531-555_569-595+\|IPR017452+92-587+	—	PF00001+93-587+7_transmembrane_receptor_(rhodopsin_family)	G3DSA:1.20.1070.10:FF:000248+492-606+5-hydroxytryptamine_receptor_1A-beta	PTHR24248+72-602+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	303-511	2.000	1-302;512-631	7um7_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.837	71453.020	8.662	18.500	26.149	12.520	48.019	51.981	15.214	10.935	46.117

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	magenta	439.322	392.819	1181.655	451.916	138.391	152.309	216.587	952.477	523.280	222.266	351.272

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.359	—	-1.277	-1.738	—	0.518	2.540	-1.994	—	—	—	—	—

No JSON data available for plots.

Back to Browser