Hg_chrom2_TN10mRNA_3809
Organism: Heterodera glycines Gene Locus: chr2:8441144-8444053 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.011 | 0.827 | 0.862 | 0.886 | 0.856 | 0.912 | 0.8 | 1.383 | 1.274 | 1.309 | 0.629 | 0.93 | 1.098 | 1.14 | 1.855 | 1.045 | 0.875 | 0.868 | 1.52 | 0.523 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3618
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.306
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRRTV,RVPLRMKRRKSKIH
|
20-49
|
0.991
|
49-109
|
0.985
|
— | — |
0.000
|
— | — |
0.061
|
0.198
|
0.055
|
0.274
|
0.183
|
0.231
|
0.408
|
0.053
|
0.370
|
0.899
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003389
|
1.000
|
2.000
|
Hsc_gene_4878.t1;Hsc_gene_4878.t2
|
Hsc_gene_4878.t1
|
— |
Q402U7.1 Serine protease 44 [Mus musculus]
|
KAI6200252.1 Peptidase S1 domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.870|GO:0005575_0.800|GO:0110165_0.800|GO:0003674_0.643|GO:0016020_0.551|GO:0009987_0.540|GO:0065007_0.501
|
IPR001254+74-492_85-311_88-414+|IPR001314+102-117_187-201_286-298+|IPR009003+50-307+|IPR043504+82-322+|IPR051487+82-300+
|
SM00020+74-492+
|
PF00089+85-311+Trypsin
|
— |
PTHR24256+82-300+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
288-392
|
2.000
|
1-287;393-506
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.865
|
56591.960
|
9.657
|
24.000
|
25.889
|
10.474
|
45.652
|
54.348
|
16.008
|
9.881
|
50.593
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1279.975
|
947.528
|
3630.267
|
511.500
|
628.385
|
3179.788
|
843.684
|
1546.408
|
909.842
|
684.673
|
781.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.708
|
-1.026
|
-2.719
|
0.265
|
2.354
|
-1.904
|
-1.150
|
-0.730
|
— | — | — | — | — |
No JSON data available for plots.