SCN Proteipedia

Hg_chrom2_TN10mRNA_3810

Organism: Heterodera glycines Gene Locus: chr2:8444574-8448127 Feature type: polypeptide

Protein Sequence

Length: 662

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.071	0.948	0.659	0.417	1.158	1.859	0.863	1.511	0.839	1.123	0.801	1.688	1.594	0.901	0.986	1.036	0.545	1.121	0.93	0.8	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3619	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.924

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.691	0.166	0.004	0.551	0.084	0.131	0.058	0.003	0.154	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007082	1.000	1.000	Hsc_gene_4879.t1	Hsc_gene_4879.t1	—	Q20977.4 Signal transducer and activator of transcription b [Caenorhabditis elegans]	KAI1712235.1 STAT protein, DNA binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003700\|GO:0006355\|GO:0007165	GO:0008150_0.951\|GO:0009987_0.899\|GO:0005575_0.864\|GO:0110165_0.853\|GO:0003674_0.840\|GO:0065007_0.828\|GO:0050789_0.811\|GO:0050794_0.801\|GO:0005622_0.780\|GO:0005488_0.762\|GO:0008152_0.759\|GO:0044238_0.737\|GO:0044237_0.735\|GO:0009058_0.732\|GO:0043170_0.723\|GO:0005737_0.710\|GO:0044249_0.706\|GO:0050896_0.702\|GO:0009059_0.693\|GO:0016020_0.693\|GO:0019222_0.692\|GO:0010467_0.686\|GO:0006139_0.685\|GO:0031323_0.683\|GO:0060255_0.679\|GO:0080090_0.678\|GO:0097159_0.675\|GO:0034654_0.672\|GO:0090304_0.669\|GO:0009889_0.668\|GO:0031326_0.668\|GO:0010556_0.667\|GO:0010468_0.664\|GO:0051716_0.664\|GO:0141187_0.664\|GO:0016070_0.663\|GO:0032774_0.659\|GO:0032501_0.654\|GO:0019219_0.651\|GO:0051252_0.649\|GO:0043226_0.648\|GO:0006351_0.647\|GO:0048518_0.646\|GO:0006355_0.645\|GO:2001141_0.645\|GO:0003676_0.644\|GO:0007154_0.639\|GO:0023052_0.639\|GO:0032502_0.639\|GO:0048856_0.639\|GO:0043229_0.628\|GO:0007165_0.627\|GO:0042221_0.626\|GO:0003677_0.622\|GO:0043565_0.621\|GO:0048522_0.602\|GO:0043227_0.600\|GO:0043231_0.574\|GO:0009893_0.566\|GO:0007166_0.563\|GO:0010604_0.558\|GO:0006366_0.553\|GO:0034097_0.541\|GO:0071345_0.541\|GO:1901652_0.541\|GO:0003690_0.536\|GO:1990837_0.535\|GO:0000976_0.534\|GO:0001067_0.534\|GO:0140110_0.534\|GO:0003700_0.532\|GO:0007275_0.532\|GO:0031325_0.520\|GO:0009891_0.516\|GO:0031328_0.514\|GO:0010557_0.513	IPR001217+106-464+\|IPR012345+207-368+\|IPR036860+527-606_537-619+	—	—	—	PTHR11801+106-464+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-6;662-662	1.000	7-661	6mbz_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.701	73914.030	7.154	7.000	23.716	12.689	45.619	54.381	13.142	10.574	48.036

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	1580.327	2621.448	1644.426	1580.346	1708.748	1610.843	864.203	2210.908	622.200	1856.936	1327.763

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.902	-0.867	—	—	—	-0.887	—	-1.215	—	—	—	—	—

No JSON data available for plots.

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