Hg_chrom2_TN10mRNA_3812
Organism: Heterodera glycines Gene Locus: chr2:8451397-8453155 Feature type: polypeptideProtein Sequence
Length: 405
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 0.746 | 0.898 | 0.681 | 1.193 | 0.823 | 1.205 | 1.358 | 1.097 | 1.335 | 0.935 | 1.743 | 1.715 | 0.95 | 1.31 | 0.917 | 0.526 | 1.085 | 0.0 | 0.581 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3621
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.365
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KREDAIRLPILPKKSRS
|
— | — |
13-53
|
0.989
|
— | — |
0.000
|
— | — |
0.157
|
0.927
|
0.044
|
0.189
|
0.035
|
0.037
|
0.037
|
0.007
|
0.044
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007084
|
1.000
|
1.000
|
Hsc_gene_4881.t1
|
Hsc_gene_4881.t1
|
— |
Q5RDW1.1 Mitochondrial ribosome-associated GTPase 2 [Pongo abelii]
|
KAH7724902.1 Protein M01E5.2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0003924|GO:0005525
|
GO:0005575_0.794|GO:0110165_0.784|GO:0005622_0.722|GO:0003674_0.671|GO:0005737_0.647|GO:0008150_0.629|GO:0016020_0.599|GO:0043226_0.564|GO:0043229_0.551|GO:0005488_0.530|GO:0009987_0.516
|
IPR006073+222-242_222-341_243-261_271-286_288-306+|IPR006169+57-219_60-217+|IPR014100+57-404_59-381+|IPR027417+221-391_221-405+|IPR031167+220-384_220-386+|IPR036726+56-218_59-217+|IPR045086+53-393+
|
— |
PF01018+60-217+GTP1/OBG|PF01926+222-341+50S_ribosome-binding_GTPase
|
G3DSA:2.70.210.12:FF:000001+57-218+GTPase_Obg
|
PTHR11702+53-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
405-405
|
1.000
|
1-404
|
7o9k_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
44743.530
|
7.905
|
7.500
|
27.407
|
10.864
|
43.457
|
56.543
|
15.309
|
12.099
|
48.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
867.179
|
849.650
|
835.930
|
820.519
|
838.949
|
709.509
|
769.477
|
819.841
|
952.563
|
963.031
|
958.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.254
|
-0.187
|
— | — |
-0.227
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.