Hg_chrom2_TN10mRNA_3814
Organism: Heterodera glycines Gene Locus: chr2:8455482-8463860 Feature type: polypeptideProtein Sequence
Length: 442
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.921 | 0.789 | 1.357 | 1.092 | 0.792 | 0.696 | 0.781 | 1.244 | 1.408 | 1.162 | 1.131 | 1.198 | 1.383 | 0.522 | 1.016 | 1.261 | 1.001 | 1.063 | 0.696 | 0.466 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3623
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKYVPPKSAMSVFEKSIRK
|
36-56
|
0.995
|
19-70
|
0.998
|
— | — |
0.000
|
— | — |
0.835
|
0.183
|
0.095
|
0.426
|
0.060
|
0.052
|
0.173
|
0.064
|
0.059
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001855
|
2.000
|
2.000
|
Hsc_gene_4883.t1;Hsc_gene_4883.t2
|
Hsc_gene_4883.t1;Hsc_gene_4883.t2
|
— |
Q0IIF0.1 Integrin-linked kinase-associated serine/threonine phosphatase 2C [Bos taurus]
|
KAF7636432.1 PPM-type phosphatase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004722|GO:0006470|GO:0043169
|
GO:0005575_0.869|GO:0110165_0.859|GO:0008150_0.807|GO:0016020_0.736|GO:0005622_0.692|GO:0003674_0.684|GO:0009987_0.663|GO:0043226_0.576|GO:0043229_0.557|GO:0003824_0.552|GO:0005737_0.551|GO:0043227_0.542|GO:0043231_0.525
|
IPR000222+180-188+|IPR001932+122-427_131-429_137-422_138-427+|IPR015655+115-427+|IPR036457+121-435_122-430+
|
SM00332+122-427+
|
PF00481+137-422+Protein_phosphatase_2C
|
— |
PTHR13832+115-427+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-442
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
48675.740
|
7.538
|
6.500
|
27.149
|
9.955
|
48.190
|
51.810
|
14.932
|
12.217
|
53.167
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2260.132
|
2209.929
|
1857.061
|
1539.472
|
1523.174
|
1185.168
|
1400.376
|
1991.222
|
1585.181
|
4309.292
|
3141.816
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
-0.659
|
-0.162
|
— |
-0.347
|
0.250
|
0.643
|
-0.366
|
— | — | — | — | — |
No JSON data available for plots.