Hg_chrom2_TN10mRNA_3815
Organism: Heterodera glycines Gene Locus: chr2:8465203-8466023 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 1.337 | 0.627 | 0.595 | 0.479 | 0.589 | 0.753 | 1.437 | 0.766 | 1.32 | 1.306 | 2.366 | 0.639 | 0.884 | 1.759 | 1.232 | 0.283 | 1.219 | 1.768 | 1.352 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3624
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.685
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
7-28
|
0.976
|
— | — |
0.000
|
— | — |
0.077
|
0.950
|
0.017
|
0.137
|
0.011
|
0.007
|
0.026
|
0.018
|
0.033
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007086
|
1.000
|
1.000
|
Hsc_gene_4884.t1
|
Hsc_gene_4884.t1
|
— |
Q7ZUH5.1 Large ribosomal subunit protein uL14m [Danio rerio]
|
KAH7694343.1 Protein MRPL-14 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.883|GO:0110165_0.872|GO:0005622_0.846|GO:0016020_0.806|GO:0043226_0.804|GO:0043229_0.796|GO:0043227_0.766|GO:0043231_0.766|GO:0005737_0.765|GO:0005739_0.583
|
IPR000218+47-174_48-174_51-166+|IPR036853+43-161_44-171+
|
SM01374+47-174+
|
PF00238+51-166+Ribosomal_protein_L14p/L23e
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
7nsj_BO
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
19825.170
|
10.847
|
21.500
|
26.437
|
12.069
|
44.828
|
55.172
|
20.115
|
6.322
|
48.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1070.058
|
565.407
|
987.269
|
958.139
|
1061.062
|
860.284
|
767.906
|
800.283
|
1079.384
|
1621.834
|
1389.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
0.624
|
— |
0.115
|
-0.288
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.