Hg_chrom2_TN10mRNA_3816
Organism: Heterodera glycines Gene Locus: chr2:8466057-8468308 Feature type: polypeptideProtein Sequence
Length: 470
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.643 | 1.286 | 0.58 | 1.101 | 0.957 | 0.927 | 0.887 | 0.957 | 0.662 | 1.093 | 0.774 | 1.001 | 2.009 | 1.678 | 1.737 | 1.033 | 0.593 | 0.645 | 1.964 | 1.126 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3625
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
10-Pre_planta
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
PKPS
|
— | — | — | — | — |
0.687
|
0.112
|
0.000
|
— |
0.266
|
0.288
|
0.086
|
0.252
|
0.140
|
0.212
|
0.315
|
0.080
|
0.226
|
0.838
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007087
|
1.000
|
1.000
|
Hsc_gene_4885.t2
|
Hsc_gene_4885.t1;Hsc_gene_4885.t2
|
— |
P85084.1 Endochitinase [Carica papaya]
|
KAI1713687.1 chitinase class I domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004568|GO:0006032|GO:0016998
|
GO:0008150_0.815|GO:0003674_0.687|GO:0050896_0.674|GO:0005575_0.572|GO:0006950_0.572|GO:0110165_0.572|GO:0044419_0.541|GO:0009605_0.538|GO:0009607_0.536|GO:0043207_0.535|GO:0051707_0.535
|
IPR000726+211-362+|IPR023346+56-372+
|
— |
PF00182+211-362+Chitinase_class_I
|
— |
PTHR47836+24-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-470
|
7v91_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.917
|
54078.720
|
9.696
|
26.500
|
24.468
|
15.532
|
44.468
|
55.532
|
15.532
|
8.936
|
48.723
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
358.105
|
250.826
|
290.644
|
143.216
|
57.985
|
98.672
|
73.680
|
137.418
|
1384.691
|
133.526
|
669.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.945
|
-0.912
|
-1.335
|
0.781
|
-0.413
|
0.369
|
-0.757
|
3.260
|
-3.082
|
— | — | — |