Hg_chrom2_TN10mRNA_3817
Organism: Heterodera glycines Gene Locus: chr2:8468516-8473039 Feature type: polypeptideProtein Sequence
Length: 608
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.956 | 0.927 | 0.964 | 1.371 | 0.928 | 1.136 | 0.987 | 0.841 | 0.978 | 0.748 | 1.161 | 1.279 | 1.234 | 1.376 | 1.198 | 0.809 | 1.022 | 0.506 | 0.387 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3626
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.226
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-28
|
0.964
|
1.000
|
1.000
|
1.000
|
0.082
|
0.015
|
0.027
|
0.195
|
0.217
|
0.251
|
0.486
|
0.043
|
0.719
|
0.201
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003390
|
1.000
|
2.000
|
Hsc_gene_4886.t1;Hsc_gene_4886.t2
|
Hsc_gene_4886.t1;Hsc_gene_4886.t2
|
— |
Q03755.2 Cuticlin-1 [Caenorhabditis elegans]
|
KAI1706580.1 cuticlin-1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.931|GO:0110165_0.928|GO:0071944_0.842|GO:0030312_0.568|GO:0031012_0.549|GO:0062023_0.548|GO:0060102_0.540
|
IPR001507+238-486_245-490+|IPR051962+12-598+
|
SM00241+245-490+
|
— | — |
PTHR22907+12-598+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;67-290
|
2.000
|
2-66;291-608
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
66308.620
|
5.986
|
-4.000
|
26.974
|
8.553
|
48.026
|
51.974
|
13.651
|
13.322
|
54.934
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkmagenta
|
1111.746
|
237.667
|
324.727
|
361.320
|
202.681
|
399.048
|
279.205
|
236.358
|
1476.743
|
2990.954
|
2342.006
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.221
|
0.467
|
0.263
|
-0.867
|
0.993
|
-0.505
|
-0.865
|
0.385
|
— | — |
-3.620
|
— | — |