Hg_chrom2_TN10mRNA_3818
Organism: Heterodera glycines Gene Locus: chr2:8473458-8475440 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.549 | 1.648 | 1.432 | 0.679 | 0.919 | 1.009 | 0.562 | 1.181 | 1.662 | 1.702 | 0.656 | 2.316 | 1.64 | 0.681 | 0.964 | 0.787 | 0.516 | 0.954 | 0.909 | 0.926 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3627
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.958
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.637
|
0.262
|
0.055
|
0.638
|
0.257
|
0.191
|
0.232
|
0.030
|
0.046
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007088
|
1.000
|
1.000
|
Hsc_gene_4887.t1
|
Hsc_gene_4887.t1;Hsc_gene_4887.t2
|
— |
Q58DD9.1 GPN-loop GTPase 2 [Sus scrofa]
|
KAF7637123.1 GPN-loop GTPase 2 [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.862|GO:0110165_0.798|GO:0005622_0.751|GO:0008150_0.609|GO:0005737_0.552|GO:0009987_0.546
|
IPR004130+9-235_9-239+|IPR027417+4-246_12-235+
|
— |
PF03029+9-235+Conserved_hypothetical_ATP_binding_protein
|
G3DSA:3.40.50.300:FF:000338+4-246+GPN-loop_GTPase_2
|
PTHR21231+9-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-254
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
29265.710
|
4.750
|
-8.000
|
24.803
|
12.598
|
44.488
|
55.512
|
11.417
|
13.386
|
44.882
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkgrey
|
901.402
|
476.623
|
575.123
|
665.476
|
723.743
|
690.160
|
683.867
|
696.574
|
718.531
|
1712.896
|
1286.739
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.344
|
0.319
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.