Hg_chrom2_TN10mRNA_3821
Organism: Heterodera glycines Gene Locus: chr2:8484833-8505151 Feature type: polypeptideProtein Sequence
Length: 4,231
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 1.11 | 1.04 | 1.288 | 0.89 | 0.879 | 0.889 | 1.217 | 1.008 | 1.137 | 0.426 | 0.904 | 1.727 | 1.127 | 1.346 | 1.519 | 0.798 | 0.863 | 0.964 | 0.64 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
mitochondria
|
KRRS,RKRR
|
24-44
|
0.959
|
— | — |
1-24
|
0.952
|
1.000
|
0.000
|
0.000
|
0.215
|
0.313
|
0.030
|
0.355
|
0.137
|
0.273
|
0.167
|
0.150
|
0.611
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003391
|
2.000
|
1.000
|
Hsc_gene_4890.t1
|
Hsc_gene_4890.t1
|
— |
Q20911.4 Cubilin homolog [Caenorhabditis elegans]
|
KAI1730180.1 CUB domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.832|GO:0005575_0.815|GO:0110165_0.762|GO:0003674_0.720|GO:0009987_0.695|GO:0071944_0.585|GO:0016020_0.570|GO:0005886_0.504
|
IPR000152+180-191+|IPR000742+165-201_168-201_169-199_189-200_203-246_206-246_213-243_234-245_248-295_251-295_296-336_299-336_340-381_382-425_385-425_428-465_431-465_453-464_466-501_469-501_489-500+|IPR000859+642-766_642-767_773-933_773-934_935-1061_935-1064_1068-1193_1068-1194_1080-1191_1200-1311_1315-1423_1315-1436_1315-1437_1438-1580_1438-1581_1583-1643_1756-1921_1757-1921_2054-2125_2054-2142_2054-2180_2073-2149_2322-2446_2332-2443_2346-2444_2447-2573_2462-2568_2577-2700_2578-2700_2593-2696_2593-2698_2702-2806_2702-2816_2702-2831_2835-2879_2835-2984_3122-3243_3122-3244_3132-3241_3252-3374_3252-3377_3252-3378_3379-3496_3379-3511_3379-3514_3516-3635_3516-3636_3526-3631_3643-3784_3643-3785_3665-3782_3789-3918_3789-3922_3925-4082_3936-4082_3943-4077_4021-4079+|IPR001881+165-201_203-246_248-295_296-336_337-381_382-425_428-465+|IPR018097+296-321_337-366+|IPR035914+633-765_640-774_768-935_772-933_935-1063_936-1066_1067-1194_1067-1197_1198-1311_1312-1435_1314-1436_1436-1586_1443-1582_1580-1709_1762-1894_1768-1837_2045-2151_2053-2144_2322-2446_2322-2450_2456-2571_2461-2568_2589-2699_2592-2697_2700-2833_2709-2808_2835-2891_3117-3247_3121-3244_3248-3377_3251-3377_3378-3514_3379-3512_3515-3634_3515-3637_3641-3790_3646-3787_3816-3915_3923-4080_3941-4082_4097-4227_4101-4221+|IPR049883+296-328_337-380+|IPR050841+3120-3246+
|
SM00042+642-767_773-934_935-1064_1068-1194_1200-1311_1315-1437_1438-1581_1757-1921_2054-2180_2322-2446_2447-2573_2578-2700_2702-2816_2835-2984_3122-3244_3252-3378_3379-3514_3516-3636_3643-3785_3789-3918_3936-4082+|SM00179+165-201_203-246_248-295_296-336_337-381_382-425_428-465+|SM00181+168-201_206-246_251-295_299-336_340-381_385-425_431-465_469-501+
|
PF00008+169-199_213-243+EGF-like_domain|PF00431+935-1061_1080-1191_1315-1423_2073-2149_2332-2443_2462-2568_2593-2696_2702-2806_3132-3241_3252-3374_3379-3496_3526-3631_3665-3782_4021-4079+CUB_domain|PF07645+296-328_337-380+Calcium-binding_EGF_domain
|
G3DSA:2.10.25.10:FF:000038+291-336+Fibrillin_2|G3DSA:2.10.25.10:FF:000143+167-204+Protein_crumbs_1|G3DSA:2.60.120.290:FF:000005+1068-1192_3120-3242_3250-3376_3516-3634+Procollagen_C-endopeptidase_enhancer_1
|
PTHR24251+3120-3246+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-4231
|
1emo_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
467619.590
|
6.212
|
-18.500
|
22.902
|
12.078
|
46.608
|
53.392
|
11.841
|
11.061
|
55.259
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
3814.216
|
2328.645
|
3779.836
|
1144.934
|
1186.608
|
893.272
|
628.638
|
1690.908
|
3806.921
|
9462.190
|
7038.503
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
-1.161
|
-1.614
|
— |
-0.395
|
-0.497
|
0.818
|
-1.286
|
— | — |
-2.665
|
— | — |