Hg_chrom2_TN10mRNA_3823
Organism: Heterodera glycines Gene Locus: chr2:8506888-8508367 Feature type: polypeptideProtein Sequence
Length: 286
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.651 | 1.399 | 1.085 | 0.991 | 0.628 | 0.749 | 1.049 | 1.166 | 0.898 | 0.159 | 0.823 | 1.457 | 1.479 | 1.284 | 1.848 | 0.688 | 1.06 | 1.614 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.335
|
0.298
|
0.035
|
0.255
|
0.086
|
0.173
|
0.079
|
0.151
|
0.450
|
0.619
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003391
|
2.000
|
1.000
|
Hsc_gene_4890.t1
|
Hsc_gene_4890.t1
|
— |
Q20911.4 Cubilin homolog [Caenorhabditis elegans]
|
KAH7725007.1 cubilin precursor [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.825|GO:0003674_0.722|GO:0005575_0.707|GO:0009987_0.691|GO:0110165_0.676
|
IPR000859+1-68_4-66_6-64_70-135_70-139_70-140_70-181+|IPR035914+3-68_6-70_69-152_70-146_153-282_156-276+|IPR050841+7-276+
|
SM00042+70-181+
|
PF00431+6-64_70-140+CUB_domain
|
— |
PTHR24251+7-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-286
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
31322.880
|
4.349
|
-15.000
|
23.077
|
11.538
|
45.455
|
54.545
|
9.441
|
13.636
|
59.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
tan
|
102.625
|
24.312
|
32.458
|
11.436
|
21.291
|
14.678
|
62.809
|
89.673
|
450.214
|
15.079
|
201.566
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.225
|
-1.394
|
0.867
|
— |
2.111
|
2.509
|
— |
4.763
|
-5.097
|
— | — | — |
No JSON data available for plots.