Hg_chrom2_TN10mRNA_3826
Organism: Heterodera glycines Gene Locus: chr2:8516243-8518612 Feature type: polypeptideProtein Sequence
Length: 565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.194 | 0.869 | 0.915 | 1.18 | 1.044 | 0.527 | 1.504 | 1.337 | 1.339 | 0.912 | 1.145 | 2.114 | 0.817 | 1.336 | 1.011 | 0.551 | 0.858 | 0.681 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3635
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.338
|
0.128
|
0.026
|
0.510
|
0.132
|
0.525
|
0.263
|
0.028
|
0.147
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003392
|
2.000
|
1.000
|
Hsc_gene_4891.t1
|
Hsc_gene_4891.t1
|
— |
Q18891.3 Vacuolar protein sorting-associated protein 33B [Caenorhabditis elegans]
|
KAI1724180.1 sec1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192
|
GO:0008150_0.747|GO:0005575_0.693|GO:0110165_0.691|GO:0005622_0.632|GO:0009987_0.609|GO:0016020_0.554|GO:0005737_0.513|GO:0043226_0.513
|
IPR001619+4-559_6-558+|IPR027482+437-564+|IPR036045+24-562+|IPR043127+161-282+|IPR043154+1-90+|IPR043155+287-381+
|
— |
PF00995+4-559+Sec1_family
|
— |
PTHR11679+6-558+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-565
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
65001.690
|
7.999
|
12.500
|
27.434
|
14.159
|
47.080
|
52.920
|
15.575
|
11.858
|
44.248
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
1012.527
|
314.306
|
208.677
|
183.310
|
170.308
|
150.598
|
506.709
|
666.127
|
406.392
|
3299.999
|
2059.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.821
|
-0.915
|
— | — | — |
1.761
|
2.040
|
-0.252
|
— | — |
-3.775
|
— | — |
No JSON data available for plots.