Hg_chrom2_TN10mRNA_3828
Organism: Heterodera glycines Gene Locus: chr2:8526205-8528361 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.584 | 0.923 | 1.01 | 0.456 | 1.279 | 1.085 | 0.913 | 1.19 | 0.999 | 0.715 | 1.122 | 1.867 | 0.955 | 0.712 | 2.538 | 0.983 | 0.954 | 0.762 | 0.814 | 1.012 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3637
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
TRRRSRSRERRRSRSKEKEREQRRSRSRERRGRSRSRDRNRRSRDRNRSRED
|
— | — | — | — | — | — |
0.000
|
— | — |
0.837
|
0.062
|
0.004
|
0.199
|
0.111
|
0.038
|
0.048
|
0.001
|
0.048
|
0.077
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007091
|
1.000
|
1.000
|
Hsc_gene_4894.t2
|
Hsc_gene_4894.t1;Hsc_gene_4894.t2
|
— |
Q80SY5.1 Pre-mRNA-splicing factor 38B [Mus musculus]
|
KAI1724136.1 PRP38 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.654|GO:0005488_0.625|GO:0097159_0.583|GO:0003676_0.560|GO:0008150_0.526
|
IPR005037+41-218_44-211+
|
— |
PF03371+44-211+PRP38_family
|
— |
PTHR23142+41-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
216-378
|
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
43897.670
|
10.497
|
29.500
|
35.450
|
10.317
|
56.349
|
43.651
|
22.222
|
13.228
|
44.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
blue
|
3560.694
|
2714.316
|
3018.342
|
2118.357
|
2223.270
|
1919.327
|
2228.118
|
1933.097
|
3992.395
|
6525.681
|
5439.987
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.495
|
-0.402
|
— |
-0.198
|
0.227
|
— |
0.349
|
— | — | — | — | — |
No JSON data available for plots.