Hg_chrom2_TN10mRNA_3829
Organism: Heterodera glycines Gene Locus: chr2:8529082-8532236 Feature type: polypeptideProtein Sequence
Length: 437
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 1.277 | 1.165 | 0.395 | 0.992 | 0.469 | 0.708 | 1.144 | 1.017 | 1.392 | 0.797 | 1.481 | 1.78 | 1.012 | 1.074 | 1.046 | 0.9 | 1.109 | 2.112 | 0.74 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3638
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.320
|
0.323
|
0.059
|
0.301
|
0.844
|
0.247
|
0.583
|
0.002
|
0.248
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007092
|
1.000
|
1.000
|
Hsc_gene_4895.t1
|
Hsc_gene_4895.t1
|
— |
Q8L7M0.1 UDP-glycosyltransferase TURAN [Arabidopsis thaliana]
|
KAI6188618.1 Chitobiosyldiphosphodolichol beta-mannosyltransferase [Aphelenchoides besseyi];KAI6201842.1 Chitobiosyldiphosphodolichol beta-mannosyltransferase [Aphelenchoides besseyi]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000030
|
GO:0005575_0.887|GO:0110165_0.886|GO:0005622_0.779|GO:0043226_0.753|GO:0043229_0.744|GO:0016020_0.741|GO:0008150_0.688|GO:0071944_0.676|GO:0005886_0.662|GO:0005737_0.660|GO:0043227_0.631|GO:0009987_0.628|GO:0043231_0.611|GO:0005773_0.567|GO:0012505_0.550|GO:0008152_0.525|GO:0044238_0.502
|
IPR026051+7-436+
|
— |
PF13692+284-394+Glycosyl_transferases_group_1
|
— |
PTHR13036+7-436+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-437
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
49687.730
|
6.017
|
-3.000
|
25.172
|
13.959
|
45.309
|
54.691
|
12.815
|
12.357
|
50.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
yellow
|
1636.080
|
1340.715
|
1008.728
|
1120.390
|
1488.147
|
1554.655
|
5839.913
|
1252.531
|
1469.508
|
953.816
|
1174.827
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-0.396
|
0.260
|
0.378
|
— |
1.920
|
-0.416
|
2.363
|
— | — | — | — | — |
No JSON data available for plots.