SCN Proteipedia

Hg_chrom2_TN10mRNA_3830

Organism: Heterodera glycines Gene Locus: chr2:8532817-8538226 Feature type: polypeptide

Protein Sequence

Length: 913

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.853	0.968	0.717	0.529	1.442	1.067	0.717	1.095	1.095	1.613	0.83	0.838	1.369	0.8	1.386	1.283	0.79	0.88	0.927	0.451	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3639	—	—	0.889	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	KKGPNGAIPNGEKRGKDGVRPRSK	37-64	0.973	—	—	—	—	0.000	—	—	0.669	0.270	0.008	0.531	0.108	0.139	0.239	0.088	0.031	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007093	1.000	1.000	Hsc_gene_4898.t1	Hsc_gene_4898.t1	—	A0A0R4IZ84.1 Telomerase-binding protein EST1A [Danio rerio]	KAK6101631.1 Est1 DNA/RNA binding domain family protein [Brugia pahangi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.943\|GO:0009987_0.804\|GO:0065007_0.734\|GO:0050789_0.711\|GO:0050794_0.695\|GO:0008152_0.685\|GO:0005575_0.681\|GO:0110165_0.675\|GO:0044237_0.665\|GO:0009058_0.663\|GO:0043170_0.658\|GO:0044249_0.646\|GO:0009059_0.636\|GO:0019222_0.624\|GO:0010467_0.622\|GO:0031323_0.618\|GO:0016020_0.613\|GO:0005622_0.596\|GO:0044238_0.589\|GO:0043226_0.565\|GO:0048519_0.551\|GO:0006139_0.544\|GO:0043229_0.541\|GO:0048523_0.538\|GO:0005737_0.531\|GO:0060255_0.530\|GO:0090304_0.528\|GO:0009056_0.523\|GO:0009889_0.523\|GO:0010556_0.523\|GO:0031326_0.523\|GO:0010468_0.522\|GO:0016070_0.521\|GO:0009892_0.516\|GO:0009057_0.515\|GO:0031324_0.514\|GO:0010605_0.513\|GO:0009890_0.509\|GO:0010558_0.509\|GO:0031327_0.509\|GO:0010629_0.507\|GO:0016071_0.506\|GO:0034655_0.505\|GO:0141188_0.505\|GO:0006401_0.504\|GO:0000184_0.501\|GO:0000956_0.501\|GO:0006402_0.501	IPR002716+703-876_705-888+\|IPR011990+21-270_49-616+\|IPR018834+207-567+\|IPR019458+79-195+\|IPR029060+702-893+\|IPR045153+33-817+	SM00670+703-876+	PF10373+207-567+Est1_DNA/RNA_binding_domain\|PF10374+79-195+Telomerase_activating_protein_Est1\|PF13638+705-888+PIN_domain	—	PTHR15696+33-817+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;282-332;884-913	2.000	26-281;333-883	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.711	102366.780	7.130	7.000	27.054	9.858	49.179	50.821	14.458	12.596	46.769

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1056.158	1715.273	1300.911	1197.999	1100.748	1008.623	1749.624	929.381	666.568	744.806	711.275

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.629	-0.655	—	-0.154	—	0.805	-0.223	1.055	—	—	—	—	—

No JSON data available for plots.

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