Hg_chrom2_TN10mRNA_3831
Organism: Heterodera glycines Gene Locus: chr2:8539073-8543054 Feature type: polypeptideProtein Sequence
Length: 785
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.77 | 0.718 | 0.571 | 1.104 | 0.49 | 0.971 | 0.955 | 1.189 | 1.601 | 0.907 | 1.798 | 1.592 | 0.882 | 1.352 | 1.037 | 0.752 | 0.907 | 0.784 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3640
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.953
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKRK,KRRR,RKIMSGQLLNGAAERRART,AKKKKGQGEEEAEKEKKKEEEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.112
|
0.087
|
0.027
|
0.254
|
0.395
|
0.374
|
0.394
|
0.119
|
0.708
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007094
|
1.000
|
1.000
|
Hsc_gene_4899.t1
|
Hsc_gene_4899.t1
|
— |
Q93380.4 Putative potassium channel regulatory protein unc-93 [Caenorhabditis elegans]
|
KAI1720086.1 ion channel regulatory protein UNC-93 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.853|GO:0005575_0.845|GO:0110165_0.845|GO:0016020_0.828|GO:0005886_0.795|GO:0071944_0.795|GO:0032501_0.623|GO:0005622_0.591|GO:0003674_0.579|GO:0043226_0.574|GO:0043229_0.564|GO:0006810_0.549|GO:0051179_0.549|GO:0051234_0.549|GO:0065007_0.517
|
IPR010291+319-721+|IPR036259+283-511_289-726_560-728+|IPR051951+235-730+
|
— |
PF05978+319-721+Ion_channel_regulatory_protein_UNC-93
|
— |
PTHR19444+235-730+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-193;748-785
|
1.000
|
194-747
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.835
|
87258.380
|
9.279
|
23.500
|
25.096
|
11.083
|
42.166
|
57.834
|
14.522
|
10.573
|
47.516
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
277.568
|
1056.619
|
185.579
|
363.062
|
268.179
|
164.400
|
91.803
|
105.710
|
91.995
|
307.107
|
214.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.740
|
-1.678
|
1.078
|
-0.469
|
-0.691
|
-0.833
|
-0.744
|
— | — | — | — | — | — |
No JSON data available for plots.