Hg_chrom2_TN10mRNA_3832
Organism: Heterodera glycines Gene Locus: chr2:8544194-8546934 Feature type: polypeptideProtein Sequence
Length: 483
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.674 | 0.963 | 0.903 | 0.357 | 0.621 | 0.956 | 0.493 | 1.449 | 0.782 | 1.371 | 0.627 | 1.705 | 1.668 | 0.916 | 1.563 | 1.361 | 1.256 | 1.067 | 1.593 | 1.218 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3641
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.606
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-17
|
0.971
|
0.994
|
3.000
|
3.000
|
0.081
|
0.132
|
0.047
|
0.190
|
0.139
|
0.138
|
0.198
|
0.018
|
0.738
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007095
|
1.000
|
1.000
|
Hsc_gene_4900.t1
|
Hsc_gene_4900.t1;Hsc_gene_4901.t1
|
— |
G5EBR3.1 Glutamate-gated chloride channel alpha [Caenorhabditis elegans]
|
KAI1718721.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.913|GO:0005575_0.878|GO:0009987_0.878|GO:0110165_0.874|GO:0016020_0.833|GO:0071944_0.757|GO:0005886_0.744|GO:0003674_0.740|GO:0065007_0.735|GO:0050789_0.712|GO:0051179_0.687|GO:0006810_0.681|GO:0051234_0.681|GO:0050896_0.668|GO:0050794_0.667|GO:0023052_0.663|GO:0007154_0.655|GO:0055085_0.629|GO:0032501_0.625|GO:0051716_0.598|GO:0006811_0.586|GO:0034220_0.582|GO:0007267_0.576|GO:0030054_0.573|GO:0005215_0.571|GO:0022857_0.571|GO:0007268_0.567|GO:0045202_0.567|GO:0098916_0.567|GO:0099536_0.567|GO:0099537_0.567|GO:0007165_0.558|GO:0015075_0.551|GO:0005216_0.549|GO:0015267_0.549|GO:0022803_0.549|GO:0022836_0.527|GO:0015276_0.512|GO:0022834_0.512|GO:0003008_0.508|GO:0065008_0.502
|
IPR006028+303-323_329-350_363-384+|IPR006029+307-418+|IPR006201+62-418_82-402_136-152_170-181_217-231_294-306+|IPR006202+112-298+|IPR018000+217-231+|IPR036719+302-409+|IPR036734+74-297_88-299+|IPR038050+298-427+
|
— |
PF02931+112-298+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+307-418+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:2.70.170.10:FF:000038+68-297+Glutamate-gated_chloride_channel_alpha
|
PTHR18945+82-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-483
|
4tnw_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
55651.650
|
9.845
|
22.000
|
23.395
|
15.114
|
48.447
|
51.553
|
14.700
|
8.696
|
49.068
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
411.011
|
913.318
|
1415.618
|
531.987
|
222.549
|
266.620
|
91.318
|
996.926
|
104.231
|
55.624
|
76.456
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.403
|
-0.917
|
-1.303
|
-1.289
|
0.275
|
-1.537
|
1.800
|
-3.309
|
— | — | — | — | — |