Hg_chrom2_TN10mRNA_3833
Organism: Heterodera glycines Gene Locus: chr2:8551406-8552793 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 0.92 | 1.055 | 0.546 | 1.319 | 2.03 | 0.503 | 1.979 | 0.821 | 0.963 | 1.159 | 1.242 | 1.173 | 0.913 | 2.1 | 0.792 | 0.649 | 0.68 | 1.015 | 0.155 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3642
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.259
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RREKTERARQARWAKK,RTPRGRPKKRFAEKKG,KKGAEEAKKKREERREKT,RKLLPKIYGKKGAEEAKKK,KRPNDDDDKENRTPRGRPK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.910
|
0.143
|
0.031
|
0.235
|
0.018
|
0.022
|
0.020
|
0.006
|
0.055
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000386
|
2.000
|
6.000
|
Hsc_gene_22157.t1;Hsc_gene_23968.t1;Hsc_gene_24569.t1;Hsc_gene_24569.t2;Hsc_gene_5593.t1;Hsc_gene_5593.t2
|
— | — | — | — |
MBC7367620
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-268
|
1.000
|
269-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
43872.620
|
10.346
|
23.500
|
35.620
|
10.026
|
56.992
|
43.008
|
21.900
|
13.720
|
43.272
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
43.441
|
29.954
|
19.193
|
23.763
|
24.043
|
24.585
|
17.229
|
35.917
|
11.377
|
116.015
|
71.170
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.876
|
— | — | — | — | — | — |
-0.921
|
— | — | — | — | — |
No JSON data available for plots.