SCN Proteipedia

Hg_chrom2_TN10mRNA_3834

Organism: Heterodera glycines Gene Locus: chr2:8555768-8558553 Feature type: polypeptide

Protein Sequence

Length: 363

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.833	0.384	0.952	0.285	1.24	0.494	0.722	1.24	1.408	1.638	0.543	1.296	1.301	0.689	1.799	1.259	1.084	0.751	1.695	0.972	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3643	—	—	1.000	1.000	1.000	2.000	1.000	1.000	1.000	1.000	1.000	—

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKLRERRKRRRRRLN	11-33	0.915	23-48	1.000	—	—	0.000	—	—	0.079	0.095	0.044	0.089	0.326	0.474	0.351	0.014	0.755	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001856	2.000	2.000	Hsc_gene_4907.t1;Hsc_gene_4907.t2	Hsc_gene_4907.t1;Hsc_gene_4907.t2	—	Q622X0.2 Uncoordinated protein 58 [Caenorhabditis briggsae]	KAI1724057.1 ion channel domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.945\|GO:0009987_0.833\|GO:0003674_0.792\|GO:0006810_0.761\|GO:0051179_0.761\|GO:0051234_0.761\|GO:0005575_0.727\|GO:0110165_0.723\|GO:0016020_0.681\|GO:0006811_0.671\|GO:0006812_0.659\|GO:0030001_0.656\|GO:0055085_0.655\|GO:0006813_0.646\|GO:0034220_0.635\|GO:0098660_0.627\|GO:0098655_0.624\|GO:0098662_0.623\|GO:0005215_0.615\|GO:0022857_0.614\|GO:0071805_0.612\|GO:0071944_0.610\|GO:0005886_0.604\|GO:0015075_0.604\|GO:0015267_0.603\|GO:0022803_0.603\|GO:0005216_0.602\|GO:0008324_0.601\|GO:0015318_0.600\|GO:0005261_0.597\|GO:0022890_0.597\|GO:0046873_0.597\|GO:0005267_0.590\|GO:0015079_0.590	IPR003280+103-359+\|IPR013099+208-266+	—	PF07885+208-266+Ion_channel	—	PTHR11003+103-359+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-2	1.000	3-363	7sk1_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.604	41424.460	7.208	3.500	27.548	12.672	46.556	53.444	14.876	12.672	44.904

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	184.631	168.153	284.194	78.062	26.484	78.081	18.144	299.232	196.903	302.951	257.502

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.528	-1.244	-1.755	-1.591	1.573	-2.095	1.840	-3.904	—	—	-3.035	—	—

No JSON data available for plots.

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