Hg_chrom2_TN10mRNA_3836
Organism: Heterodera glycines Gene Locus: chr2:8568278-8573212 Feature type: polypeptideProtein Sequence
Length: 749
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.009 | 1.087 | 0.898 | 1.151 | 0.668 | 0.856 | 0.795 | 1.001 | 1.098 | 1.137 | 0.405 | 1.414 | 1.558 | 1.258 | 1.499 | 1.583 | 0.963 | 0.708 | 0.719 | 0.55 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3645
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
KRSR
|
— | — |
74-95
|
0.870
|
— |
0.522
|
0.012
|
0.000
|
— |
0.145
|
0.109
|
0.043
|
0.230
|
0.076
|
0.148
|
0.121
|
0.082
|
0.286
|
0.941
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007096
|
1.000
|
1.000
|
Hsc_gene_4902.t1
|
Hsc_gene_4902.t1;Hsc_gene_4920.t1
|
— |
Q23490.1 Peroxidase mlt-7 [Caenorhabditis elegans]
|
KAI1711553.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.879|GO:0009987_0.807|GO:0005575_0.749|GO:0110165_0.748|GO:0003674_0.698|GO:0050896_0.632|GO:0051716_0.563|GO:0003824_0.550|GO:0042221_0.508
|
IPR003582+62-97_62-98_63-97+|IPR010255+209-748+|IPR019791+202-749_215-724_239-250_282-297_415-433_433-453_458-484_511-521_629-649_700-714+|IPR037120+192-749+|IPR050702+43-748+
|
SM00254+62-98+
|
PF01549+62-97+ShK_domain-like|PF03098+215-724+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000007+198-749+Peroxidase_mlt-7
|
PTHR11475+43-748+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-749
|
9sds_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
81960.010
|
8.120
|
15.500
|
20.961
|
10.414
|
45.928
|
54.072
|
12.016
|
8.945
|
56.475
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
1602.406
|
171.924
|
441.622
|
1043.283
|
989.390
|
2868.003
|
179.380
|
843.272
|
248.282
|
4372.989
|
2605.257
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.131
|
2.463
|
1.349
|
— |
1.551
|
-3.990
|
-1.878
|
-2.089
|
-4.247
|
— | — |
4.291
|
— |