Hg_chrom2_TN10mRNA_3837
Organism: Heterodera glycines Gene Locus: chr2:8573542-8586073 Feature type: polypeptideProtein Sequence
Length: 1,766
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 0.974 | 0.71 | 0.703 | 1.472 | 1.191 | 0.701 | 0.906 | 0.831 | 1.056 | 0.918 | 0.933 | 1.133 | 1.307 | 1.641 | 1.327 | 1.049 | 0.789 | 0.828 | 0.4 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3646
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
KRRK,REEKRTK,RKPGTLTSSARRRWL,RRKNKSGEEGRKEKER,KKEDSRGRDTLKRWRT,RRREKEEEDDTRRKNKS,KRGEERRREKEEEDDTRRK,RKGKKEKGRRKKKMGEEEEKRERSGKIASIWKKIGLNSRGNGERNRRRRK
|
— | — | — | — |
1-23
|
0.995
|
1.000
|
2.000
|
2.000
|
0.247
|
0.049
|
0.021
|
0.283
|
0.235
|
0.175
|
0.217
|
0.117
|
0.759
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007097
|
1.000
|
1.000
|
Hsc_gene_4905.t1
|
Hsc_gene_4903.t1;Hsc_gene_4904.t1
|
— |
Q24522.2 Protein bunched, class 1/class 3/D/E isoforms [Drosophila melanogaster]
|
CAD2122079.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357
|
GO:0008150_0.915|GO:0005575_0.820|GO:0110165_0.820|GO:0065007_0.803|GO:0009987_0.763|GO:0050789_0.726|GO:0005622_0.719|GO:0050794_0.707|GO:0016020_0.581|GO:0043226_0.551|GO:0043229_0.517
|
IPR000580+1697-1747+
|
— |
PF01166+1697-1747+TSC-22/dip/bun_family
|
— |
PTHR12348+1307-1748+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
542-802;902-949;1195-1310;1386-1688
|
5.000
|
1-541;803-901;950-1194;1311-1385;1689-1766
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.869
|
197366.600
|
8.676
|
40.000
|
28.652
|
8.324
|
53.171
|
46.829
|
15.912
|
12.741
|
50.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2329.407
|
762.203
|
2097.666
|
2110.182
|
2167.612
|
4337.288
|
3111.800
|
5842.731
|
1438.586
|
1451.160
|
1445.771
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.232
|
1.332
|
— | — |
1.015
|
-0.468
|
— |
-0.768
|
— | — | — | — | — |