Hg_chrom2_TN10mRNA_3839
Organism: Heterodera glycines Gene Locus: chr2:8591330-8597996 Feature type: polypeptideProtein Sequence
Length: 558
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.667 | 0.5 | 0.782 | 0.433 | 1.165 | 0.551 | 0.704 | 1.613 | 1.712 | 1.574 | 0.706 | 1.265 | 1.294 | 0.724 | 1.609 | 1.306 | 1.058 | 0.76 | 1.241 | 1.054 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3648
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKLRERRKRRRRRLN,KKTFTKLHYFGRKIRE
|
11-33
|
0.915
|
23-48
|
1.000
|
— | — |
0.000
|
— | — |
0.076
|
0.117
|
0.056
|
0.108
|
0.309
|
0.569
|
0.314
|
0.009
|
0.763
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001856
|
2.000
|
2.000
|
Hsc_gene_4907.t1;Hsc_gene_4907.t2
|
Hsc_gene_4907.t1;Hsc_gene_4907.t2
|
— |
Q622X0.2 Uncoordinated protein 58 [Caenorhabditis briggsae]
|
KAI1724057.1 ion channel domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.956|GO:0009987_0.853|GO:0003674_0.807|GO:0051179_0.795|GO:0006810_0.786|GO:0051234_0.786|GO:0005575_0.728|GO:0110165_0.722|GO:0006811_0.692|GO:0016020_0.692|GO:0055085_0.680|GO:0006812_0.675|GO:0030001_0.672|GO:0034220_0.658|GO:0006813_0.656|GO:0098660_0.646|GO:0098655_0.639|GO:0098662_0.638|GO:0005215_0.634|GO:0022857_0.634|GO:0005216_0.625|GO:0015075_0.625|GO:0015267_0.625|GO:0022803_0.625|GO:0071805_0.621|GO:0008324_0.616|GO:0015318_0.614|GO:0005261_0.611|GO:0022890_0.610|GO:0046873_0.610|GO:0005267_0.600|GO:0015079_0.600|GO:0071944_0.600|GO:0005886_0.599
|
IPR003092+107-129_394-408+|IPR003280+103-453_222-250_377-386+|IPR013099+208-266_345-417+
|
— |
PF07885+208-266_345-417+Ion_channel
|
— |
PTHR11003+103-453+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-558
|
7sk1_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
63732.470
|
8.838
|
16.000
|
27.061
|
13.082
|
46.953
|
53.047
|
15.771
|
11.290
|
43.728
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
801.381
|
625.377
|
1014.375
|
327.423
|
101.382
|
340.920
|
111.918
|
1426.381
|
272.906
|
1820.945
|
1157.499
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.469
|
-1.071
|
-1.523
|
-1.725
|
1.764
|
-1.596
|
1.965
|
-3.530
|
-2.852
|
— |
-3.737
|
— | — |
No JSON data available for plots.