Hg_chrom2_TN10mRNA_3841
Organism: Heterodera glycines Gene Locus: chr2:8600328-8602260 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 1.043 | 0.815 | 0.238 | 1.149 | 0.796 | 0.739 | 0.69 | 0.996 | 1.212 | 1.045 | 1.623 | 1.437 | 0.862 | 1.478 | 0.887 | 0.961 | 1.202 | 2.387 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3650
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.819
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
5-25
|
0.996
|
— | — | — | — |
0.001
|
— | — |
0.086
|
0.839
|
0.127
|
0.092
|
0.122
|
0.045
|
0.071
|
0.026
|
0.089
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001150
|
2.000
|
3.000
|
Hsc_gene_4909.t1;Hsc_gene_4918.t1;Hsc_gene_4918.t2
|
Hsc_gene_4909.t1
|
— | — |
KAF7638310.1 SURF1-like protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.909|GO:0110165_0.899|GO:0008150_0.862|GO:0016020_0.854|GO:0005622_0.791|GO:0043226_0.764|GO:0005737_0.760|GO:0043229_0.749|GO:0009987_0.742|GO:0043227_0.731|GO:0043231_0.720|GO:0005739_0.562
|
IPR002994+59-290_68-278_72-284+|IPR045214+42-287+
|
— |
PF02104+68-278+SURF1_family
|
— |
PTHR23427+42-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
33260.270
|
9.867
|
10.000
|
26.897
|
12.414
|
46.552
|
53.448
|
15.517
|
11.379
|
47.241
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
460.883
|
130.171
|
191.246
|
234.230
|
280.739
|
240.693
|
290.847
|
246.646
|
83.808
|
1348.044
|
806.229
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.326
|
0.710
|
0.401
|
0.230
|
— |
0.286
|
— |
0.383
|
-4.082
|
— | — | — | — |
No JSON data available for plots.