SCN Proteipedia

Hg_chrom2_TN10mRNA_3850

Organism: Heterodera glycines Gene Locus: chr2:8624445-8635295 Feature type: polypeptide

Protein Sequence

Length: 1,398

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.857	1.115	0.78	0.543	1.073	1.119	0.749	1.216	1.144	1.247	1.084	1.052	1.212	0.812	1.65	1.175	0.997	0.737	0.88	0.631	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3657	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.766

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	mitochondrion	—	RRQDIISLINALKKFKL,KRSAFFDSSIHGRKKNA	57-88	0.988	43-63	0.961	—	—	0.000	—	—	0.240	0.598	0.087	0.353	0.272	0.077	0.121	0.459	0.285	0.052

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001152	2.000	3.000	Hsc_gene_4915.t1;Hsc_gene_4927.t1;Hsc_gene_4927.t2	Hsc_gene_4909.t1;Hsc_gene_4914.t1;Hsc_gene_4918.t1;Hsc_gene_4918.t2;Hsc_gene_4921.t1	—	P46463.1 Peroxisomal ATPase PEX1 [Komagataella pastoris]	KAF7623358.1 BTB_2 domain-containing protein [Meloidogyne graminicola];KAF7638302.1 BTB_2 domain-containing protein [Meloidogyne graminicola]	No	-0.170

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005515\|GO:0005524\|GO:0006352\|GO:0016020\|GO:0016887\|GO:0030880\|GO:0044237\|GO:0051260	GO:0005575_0.921\|GO:0110165_0.893\|GO:0008150_0.850\|GO:0005622_0.765\|GO:0009987_0.732\|GO:0016020_0.671\|GO:0043226_0.648\|GO:0043229_0.639\|GO:0003674_0.578\|GO:0071840_0.546\|GO:0043227_0.545\|GO:0005737_0.531\|GO:0043231_0.522	IPR000210+896-1003+\|IPR002994+148-214+\|IPR003131+898-993+\|IPR003593+221-349+\|IPR003959+227-346+\|IPR005574+445-533+\|IPR006590+435-551+\|IPR010997+446-533+\|IPR011333+895-997_896-1000+\|IPR027417+230-439_231-438+\|IPR038324+443-544+\|IPR041569+372-407+\|IPR050168+232-438+	SM00225+896-1003+\|SM00382+221-349+\|SM00657+435-551+	PF00004+227-346+ATPase_family_associated_with_various_cellular_activities_(AAA)\|PF02104+148-214+SURF1_family\|PF02214+898-993+BTB/POZ_domain\|PF03874+445-533+RNA_polymerase_Rpb4\|PF17862+372-407+AAA+_lid_domain	—	PTHR23077+232-438+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	808-870;1178-1332	3.000	1-807;871-1177;1333-1398	8c0w_F	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.815	157700.930	10.254	80.000	28.398	10.086	51.860	48.140	17.668	10.730	47.711

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	tan	1399.183	2265.027	2375.780	1786.738	1335.868	1275.014	1040.447	2199.076	1550.757	354.125	866.967

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.161	-0.479	-0.302	-0.452	—	-0.284	0.683	-0.938	2.013	—	—	—	—

No JSON data available for plots.

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