Hg_chrom2_TN10mRNA_3854
Organism: Heterodera glycines Gene Locus: chr2:8641099-8643390 Feature type: polypeptideProtein Sequence
Length: 501
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 1.439 | 1.125 | 2.065 | 1.397 | 1.024 | 0.428 | 1.397 | 0.843 | 1.295 | 1.089 | 0.822 | 1.331 | 0.499 | 1.181 | 0.998 | 0.851 | 0.847 | 1.689 | 0.998 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3661
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.586
|
0.128
|
0.010
|
0.631
|
0.174
|
0.232
|
0.211
|
0.017
|
0.081
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001151
|
3.000
|
2.000
|
Hsc_gene_4911.t1;Hsc_gene_4911.t2
|
Hsc_gene_4911.t1;Hsc_gene_4911.t2
|
— |
O01965.3 E3 ubiquitin-protein ligase ari-1.1 [Caenorhabditis elegans]
|
KAF7638308.1 RBR-type E3 ubiquitin transferase, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004842|GO:0008270|GO:0016567
|
GO:0008150_0.840|GO:0005575_0.716|GO:0110165_0.709|GO:0009987_0.644|GO:0005622_0.630|GO:0016020_0.562|GO:0005737_0.553|GO:0043226_0.548|GO:0008152_0.531|GO:0043170_0.522|GO:0003674_0.518|GO:0044238_0.515|GO:0043229_0.512
|
IPR001841+136-181+|IPR002867+202-263_203-263_271-335+|IPR013083+131-216+|IPR031127+82-375+|IPR044066+132-339+|IPR045840+349-460+|IPR048962+67-104+
|
SM00647+202-263_271-335+
|
PF01485+203-263+IBR_domain,_a_half_RING-finger_domain|PF19422+349-460+Ariadne_domain|PF21235+67-104+E3_ubiquitin-protein_ligase_ARIH1,_UBA-like_domain|PF22191+285-326+IBR_domain
|
G3DSA:1.20.120.1750:FF:000002+264-484+RBR-type_E3_ubiquitin_transferase
|
PTHR11685+82-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47
|
1.000
|
48-501
|
2m9y_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.516
|
58426.260
|
6.378
|
-1.000
|
30.339
|
13.174
|
52.695
|
47.305
|
15.768
|
14.571
|
46.707
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
382.234
|
379.854
|
233.213
|
188.305
|
225.005
|
276.654
|
558.135
|
748.214
|
362.033
|
422.233
|
396.433
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.932
|
-1.149
|
— |
0.225
|
0.313
|
1.023
|
1.327
|
— | — | — | — | — | — |
No JSON data available for plots.