Hg_chrom2_TN10mRNA_3856
Organism: Heterodera glycines Gene Locus: chr2:8649314-8653705 Feature type: polypeptideProtein Sequence
Length: 580
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.762 | 1.002 | 0.784 | 0.535 | 1.322 | 1.105 | 0.657 | 0.948 | 1.916 | 1.281 | 0.993 | 1.116 | 1.245 | 0.829 | 1.267 | 0.887 | 0.961 | 0.888 | 1.194 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3663
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.658
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRQDIISLINALKKFKL,RRNRLEIFATIGRRKIQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.442
|
0.299
|
0.038
|
0.549
|
0.181
|
0.243
|
0.211
|
0.070
|
0.228
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003395
|
1.000
|
2.000
|
Hsc_gene_4914.t1;Hsc_gene_4921.t1
|
Hsc_gene_4913.t1;Hsc_gene_4921.t1
|
— |
D3ZRC4.1 Calcium-independent phospholipase A2-gamma [Rattus norvegicus]
|
ETN80522.1 phospholipase, patatin family [Necator americanus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0006352|GO:0006629|GO:0030880|GO:0044237
|
GO:0008150_0.897|GO:0005575_0.793|GO:0110165_0.783|GO:0003674_0.779|GO:0009987_0.750|GO:0005622_0.683|GO:0016020_0.677|GO:0003824_0.633|GO:0005737_0.632|GO:0008152_0.614|GO:0044238_0.601|GO:0043226_0.600|GO:0043229_0.585|GO:0044237_0.563|GO:0050896_0.547|GO:0043227_0.541|GO:0043231_0.523|GO:0016787_0.515
|
IPR002641+251-447+|IPR005574+10-114+|IPR006590+1-121+|IPR010997+8-117+|IPR016035+248-571+|IPR038324+1-119+
|
SM00657+1-121+
|
PF01734+251-447+Patatin-like_phospholipase|PF03874+10-114+RNA_polymerase_Rpb4
|
G3DSA:1.20.1250.40:FF:000002+1-119+DNA-directed_RNA_polymerase_III_subunit_RPC9
|
PTHR24185+114-572+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-580
|
9lxo_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
65993.050
|
8.044
|
8.500
|
26.897
|
10.517
|
47.586
|
52.414
|
14.655
|
12.241
|
44.483
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1528.266
|
1911.737
|
1688.709
|
1501.905
|
1203.594
|
1133.454
|
1102.378
|
2167.889
|
1032.572
|
1895.609
|
1525.736
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.409
|
-0.485
|
— |
-0.352
|
— | — |
0.830
|
-0.832
|
— | — | — | — | — |
No JSON data available for plots.