Hg_chrom2_TN10mRNA_3858
Organism: Heterodera glycines Gene Locus: chr2:8655306-8657923 Feature type: polypeptideProtein Sequence
Length: 490
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.044 | 0.522 | 0.779 | 0.563 | 0.476 | 0.785 | 0.777 | 0.408 | 1.542 | 1.71 | 0.371 | 2.041 | 1.984 | 0.903 | 0.875 | 1.108 | 0.836 | 1.268 | 1.727 | 1.321 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3665
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.090
|
0.143
|
0.005
|
0.212
|
0.423
|
0.604
|
0.441
|
0.027
|
0.495
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007103
|
1.000
|
1.000
|
Hsc_gene_4923.t1
|
Hsc_gene_4923.t1
|
— |
A8WGF7.2 Protein spinster homolog 1 [Xenopus tropicalis]
|
KAI1721059.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0008150_0.840|GO:0009987_0.753|GO:0005575_0.727|GO:0110165_0.727|GO:0016020_0.701|GO:0006810_0.599|GO:0051179_0.599|GO:0051234_0.599|GO:0071944_0.586|GO:0005886_0.584
|
IPR011701+45-406+|IPR020846+40-467+|IPR036259+34-461_38-459+|IPR044770+39-475_41-460+
|
— |
PF07690+45-406+Major_Facilitator_Superfamily
|
— |
PTHR23505+39-475+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-490
|
8jhq_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
54582.120
|
6.477
|
0.000
|
14.694
|
14.694
|
32.857
|
67.143
|
7.551
|
7.143
|
49.592
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
2208.760
|
1597.651
|
1349.889
|
1157.440
|
972.659
|
932.869
|
1138.749
|
1523.739
|
620.960
|
5945.231
|
3663.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.472
|
-0.602
|
-0.114
|
-0.282
|
— |
0.296
|
0.602
|
-0.280
|
-3.361
|
— | — | — | — |
No JSON data available for plots.