Hg_chrom2_TN10mRNA_3859
Organism: Heterodera glycines Gene Locus: chr2:8658088-8659741 Feature type: polypeptideProtein Sequence
Length: 282
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.237 | 1.072 | 0.903 | 0.489 | 0.946 | 0.909 | 0.971 | 1.241 | 1.576 | 1.102 | 0.967 | 1.043 | 1.379 | 0.682 | 0.362 | 1.013 | 1.163 | 1.128 | 0.818 | 0.626 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3666
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.623
|
0.291
|
0.041
|
0.786
|
0.141
|
0.044
|
0.078
|
0.036
|
0.091
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007104
|
1.000
|
1.000
|
Hsc_gene_4924.t2
|
Hsc_gene_4924.t1;Hsc_gene_4924.t2
|
— |
Q19420.3 Inositol monophosphatase ttx-7 [Caenorhabditis elegans]
|
KAF7638306.1 Inositol-1-monophosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008934|GO:0046854
|
GO:0008150_0.755|GO:0003674_0.745|GO:0003824_0.622|GO:0005575_0.579|GO:0110165_0.576|GO:0008152_0.560|GO:0009987_0.552|GO:0016787_0.542|GO:0016788_0.512
|
IPR000760+11-271_44-64_66-82_90-106_139-162_192-213_223-247+|IPR020550+226-240+|IPR020552+21-40_113-123_141-159_251-273+|IPR020583+90-103+|IPR033942+10-261+
|
— |
PF00459+11-271+Inositol_monophosphatase_family
|
G3DSA:3.30.540.10:FF:000004+4-148+Inositol-1-monophosphatase|G3DSA:3.40.190.80:FF:000002+150-282+Inositol-1-monophosphatase
|
PTHR20854+10-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-282
|
7vce_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
30301.530
|
5.592
|
-3.500
|
21.277
|
10.638
|
43.617
|
56.383
|
10.638
|
10.638
|
54.965
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2332.742
|
2197.512
|
1755.062
|
2208.219
|
2280.384
|
2320.733
|
1799.125
|
1914.160
|
1509.551
|
3645.387
|
2730.029
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.553
|
-0.130
|
0.440
|
— | — |
-0.357
|
-0.383
|
— | — | — | — | — | — |
No JSON data available for plots.