Hg_chrom2_TN10mRNA_3860
Organism: Heterodera glycines Gene Locus: chr2:8661064-8662105 Feature type: polypeptideProtein Sequence
Length: 236
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.591 | 1.38 | 0.77 | 1.899 | 0.847 | 0.652 | 0.958 | 2.119 | 1.601 | 0.973 | 0.706 | 1.246 | 1.412 | 0.652 | 1.384 | 0.969 | 0.625 | 0.963 | 1.956 | 0.997 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3667
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
43-83
|
0.796
|
— | — |
0.000
|
— | — |
0.313
|
0.450
|
0.133
|
0.605
|
0.232
|
0.197
|
0.237
|
0.099
|
0.293
|
0.226
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007105
|
1.000
|
1.000
|
Hsc_gene_4925.t1
|
Hsc_gene_4925.t1
|
— |
A0A0R4IY06.1 Phospholipase A and acyltransferase 1 [Danio rerio]
|
KAH7730938.1 NC domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.895|GO:0009987_0.813|GO:0003674_0.799|GO:0003824_0.690|GO:0008152_0.674|GO:0005575_0.639|GO:0110165_0.639|GO:0044238_0.623|GO:0044237_0.605|GO:0005622_0.537|GO:0006629_0.523|GO:0044255_0.515|GO:0005737_0.513
|
IPR007053+21-142_26-148+|IPR051496+19-149+
|
— |
PF04970+21-142+Lecithin_retinol_acyltransferase
|
— |
PTHR13943+19-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-236
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
26901.900
|
8.186
|
10.000
|
25.000
|
15.254
|
44.068
|
55.932
|
15.678
|
9.322
|
49.153
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1058.812
|
453.460
|
966.574
|
977.609
|
974.838
|
920.540
|
621.965
|
1455.172
|
939.947
|
1538.534
|
1281.997
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
0.971
|
0.125
|
— | — |
-0.556
|
0.555
|
-1.084
|
— | — | — | — | — |
No JSON data available for plots.