Hg_chrom2_TN10mRNA_3862
Organism: Heterodera glycines Gene Locus: chr2:8665090-8667375 Feature type: polypeptideProtein Sequence
Length: 449
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 1.036 | 0.769 | 0.538 | 1.114 | 1.199 | 0.981 | 0.891 | 0.792 | 1.264 | 0.844 | 0.917 | 1.361 | 0.985 | 1.591 | 0.955 | 0.913 | 0.945 | 0.171 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3669
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.777
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
33-57
|
0.993
|
17-57
|
1.000
|
— | — |
0.000
|
— | — |
0.508
|
0.223
|
0.109
|
0.556
|
0.163
|
0.158
|
0.308
|
0.072
|
0.249
|
0.166
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001152
|
2.000
|
3.000
|
Hsc_gene_4915.t1;Hsc_gene_4927.t1;Hsc_gene_4927.t2
|
Hsc_gene_4915.t1;Hsc_gene_4927.t1;Hsc_gene_4927.t2
|
— |
Q5DTY9.2 BTB/POZ domain-containing protein KCTD16 [Mus musculus]
|
KAF7623358.1 BTB_2 domain-containing protein [Meloidogyne graminicola];KAF7638302.1 BTB_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0051260
|
GO:0008150_0.779|GO:0005575_0.756|GO:0110165_0.743|GO:0009987_0.687|GO:0065007_0.629|GO:0050789_0.613|GO:0003674_0.607|GO:0016020_0.587|GO:0050794_0.572
|
IPR000210+158-265+|IPR003131+160-255+|IPR011333+157-259_158-262+
|
SM00225+158-265+
|
PF02214+160-255+BTB/POZ_domain
|
— |
PTHR14499+155-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
68-134;446-449
|
2.000
|
1-67;135-445
|
6qb7_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
49763.520
|
9.457
|
15.000
|
26.058
|
10.022
|
47.439
|
52.561
|
15.145
|
10.913
|
50.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
orange
|
872.868
|
1294.527
|
1692.436
|
880.103
|
383.851
|
364.245
|
280.643
|
1801.726
|
586.295
|
867.501
|
746.985
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.158
|
-0.694
|
-0.835
|
-1.229
|
— |
-0.367
|
2.209
|
-2.543
|
— | — | — | — | — |
No JSON data available for plots.