Hg_chrom2_TN10mRNA_3865
Organism: Heterodera glycines Gene Locus: chr2:8673951-8675858 Feature type: polypeptideProtein Sequence
Length: 343
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.712 | 1.153 | 1.007 | 0.402 | 1.069 | 1.047 | 1.041 | 1.312 | 1.037 | 1.261 | 0.751 | 0.686 | 1.539 | 1.121 | 1.071 | 0.958 | 0.956 | 1.149 | 1.121 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.469
|
0.423
|
0.085
|
0.592
|
0.195
|
0.261
|
0.150
|
0.043
|
0.131
|
0.336
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007108
|
1.000
|
1.000
|
Hsc_gene_4930.t1
|
Hsc_gene_4930.t1
|
— |
Q66HG4.1 Galactose mutarotase [Rattus norvegicus]
|
WP_163266111.1 aldose epimerase family protein [Chelativorans alearense]
|
MDE2017377
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0005975|GO:0016853|GO:0019318|GO:0030246
|
GO:0008150_0.936|GO:0003674_0.869|GO:0008152_0.803|GO:0005575_0.789|GO:0110165_0.780|GO:0044238_0.772|GO:0003824_0.756|GO:0044281_0.710|GO:0005975_0.681|GO:0005996_0.670|GO:0006012_0.670|GO:0019318_0.670|GO:0016853_0.650|GO:0016854_0.650|GO:0016857_0.650|GO:0009056_0.595|GO:0044282_0.572|GO:0016052_0.562|GO:0019320_0.562|GO:0019388_0.562|GO:0033499_0.562|GO:0046365_0.562|GO:0004034_0.545|GO:0005622_0.527|GO:0005737_0.502
|
IPR008183+19-340+|IPR011013+4-341+|IPR014718+4-342+|IPR015443+3-342+|IPR047215+20-337+
|
— |
PF01263+19-340+Aldose_1-epimerase
|
— |
PTHR10091+22-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-343
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.717
|
37990.960
|
6.236
|
-1.500
|
24.781
|
11.662
|
46.356
|
53.644
|
12.828
|
11.953
|
52.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
1427.724
|
41.711
|
760.549
|
745.383
|
927.482
|
945.391
|
1248.075
|
992.787
|
415.353
|
3811.761
|
2356.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.959
|
4.021
|
— |
0.283
|
— |
0.412
|
— |
0.472
|
-3.327
|
— |
-1.767
|
— | — |
No JSON data available for plots.