Hg_chrom2_TN10mRNA_3866
Organism: Heterodera glycines Gene Locus: chr2:8676301-8680476 Feature type: polypeptideProtein Sequence
Length: 747
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.389 | 0.498 | 0.706 | 0.323 | 2.03 | 0.755 | 1.1 | 1.807 | 0.327 | 0.706 | 2.698 | 1.102 | 0.595 | 0.515 | 2.213 | 1.912 | 0.395 | 0.243 | 1.442 | 0.118 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3673
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.976
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKGGKDGREKGRER,RKRWKGKWKRKRRKVEK,KRKGKGKRRKVEKGRGK,KRKRRKVESGRGRKKGGK,KKPHQVARRNERERKRVQ,KRKRKKKGGKDGREKGRER,KREGKEEESGKRERKRWKG,KRERKRWKGKWKRKRRKVE,KKRRKRWKRKGKGKRRKVE,KRRKRWKRKGKGKRRKVEK,KRKRKKKRRKRWKRKGKGK,RKRKKKRRKRWKRKGKGKR,KRKKKRRKRWKRKGKGKRR,RKKKRRKRWKRKGKGKRRK,KKKRRKRWKRKGKGKRRKV,KKRRKRWKRKGKGKRRKVK,KRRKRWKRKGKGKRRKVKQ,RKVKQTTKLTTEFGKAKGR,KKSQFACKLVSSPPKTKQR,SPPKTKQRSRGTGVKFGGKKPHQVARRNERERKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.640
|
0.079
|
0.010
|
0.474
|
0.098
|
0.035
|
0.039
|
0.002
|
0.112
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007109
|
1.000
|
1.000
|
Hsc_gene_4931.t1
|
Hsc_gene_4931.t1
|
— |
Q90259.1 Achaete-scute homolog 1a [Danio rerio]
|
KAF7638298.1 BHLH domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.960|GO:0032502_0.917|GO:0048856_0.917|GO:0005575_0.913|GO:0110165_0.911|GO:0043226_0.908|GO:0005622_0.907|GO:0043229_0.907|GO:0032501_0.890|GO:0016020_0.886|GO:0007275_0.884|GO:0003674_0.876|GO:0003676_0.876|GO:0005488_0.876|GO:0097159_0.876|GO:0065007_0.869|GO:0050789_0.868|GO:0005634_0.865|GO:0009987_0.865|GO:0043227_0.865|GO:0043231_0.865|GO:0050794_0.865|GO:0003677_0.778|GO:0008152_0.768|GO:0009058_0.768|GO:0009059_0.768|GO:0010467_0.768|GO:0043170_0.768|GO:0044237_0.768|GO:0044249_0.768|GO:0019222_0.754|GO:0031323_0.754|GO:0009889_0.740|GO:0010468_0.740|GO:0010556_0.740|GO:0031326_0.740|GO:0060255_0.740|GO:0048513_0.716|GO:0006139_0.705|GO:0016070_0.705|GO:0044238_0.705|GO:0090304_0.705|GO:0048731_0.698|GO:0034654_0.695|GO:0032774_0.693|GO:0141187_0.693|GO:0080090_0.679|GO:0048869_0.678|GO:0030154_0.671|GO:0019219_0.659|GO:0051252_0.649|GO:0006351_0.648|GO:0007399_0.646|GO:0006355_0.633|GO:2001141_0.633|GO:0048518_0.623|GO:0048522_0.609|GO:0048519_0.595|GO:0003690_0.589|GO:0043565_0.588|GO:0048523_0.579|GO:0050896_0.573|GO:0043228_0.566|GO:0043232_0.566|GO:0022008_0.558|GO:0006366_0.555|GO:0006357_0.537|GO:0009893_0.530|GO:0050793_0.523|GO:0031325_0.519|GO:0010604_0.516|GO:0009891_0.511|GO:0031328_0.511|GO:1990837_0.505
|
IPR011598+489-550_492-551_495-556+|IPR036638+484-555_486-556+|IPR050283+418-609+
|
SM00353+495-556+
|
PF00010+492-551+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR23349+418-609+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-712
|
1.000
|
713-747
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
86191.950
|
10.991
|
107.500
|
48.327
|
8.032
|
69.210
|
30.790
|
32.262
|
16.064
|
39.625
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
451.731
|
96.094
|
117.631
|
68.411
|
31.292
|
23.047
|
127.251
|
66.330
|
246.659
|
1592.560
|
1015.746
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.627
|
-0.673
|
-1.156
|
— |
2.475
|
1.421
|
1.083
|
-2.776
|
— |
-5.386
|
— | — |
No JSON data available for plots.