Hg_chrom2_TN10mRNA_3868
Organism: Heterodera glycines Gene Locus: chr2:8684308-8688979 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.885 | 1.103 | 0.862 | 0.743 | 1.58 | 1.547 | 0.735 | 1.221 | 1.277 | 1.165 | 1.11 | 1.69 | 0.798 | 0.857 | 1.378 | 0.903 | 0.612 | 0.61 | 1.105 | 0.718 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.870
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRR,PRKR,PVKKRKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.879
|
0.081
|
0.044
|
0.288
|
0.056
|
0.092
|
0.084
|
0.014
|
0.066
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007110
|
1.000
|
1.000
|
Hsc_gene_4934.t1
|
Hsc_gene_4933.t1;Hsc_gene_4934.t1
|
— |
Q0PGJ6.1 NADPH-dependent aldo-keto reductase, chloroplastic [Arabidopsis thaliana]
|
KAF7636293.1 Aldo_ket_red domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.799|GO:0005575_0.761|GO:0110165_0.757|GO:0003674_0.695|GO:0005622_0.689|GO:0016020_0.605|GO:0009987_0.590|GO:0005737_0.578|GO:0043226_0.571|GO:0003824_0.536|GO:0043229_0.522|GO:0043227_0.503
|
IPR001965+366-412+|IPR011011+352-412+|IPR013083+357-414+|IPR019786+367-411+|IPR019787+364-414+|IPR020471+443-503_468-492_577-606_618-642+|IPR023210+448-494_503-682+|IPR028643+366-411+|IPR036812+441-502_445-685_503-692+
|
SM00249+366-412+
|
PF00248+448-494_503-682+Aldo/keto_reductase_family
|
— |
PTHR43827+443-503+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
164-362
|
2.000
|
1-163;363-696
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
79227.010
|
7.308
|
7.500
|
30.747
|
9.195
|
51.580
|
48.420
|
16.523
|
14.224
|
43.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1550.283
|
1916.539
|
1658.681
|
1244.801
|
1267.299
|
1372.759
|
1580.550
|
1649.875
|
1938.239
|
1319.868
|
1584.884
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
-0.760
|
-0.306
|
— | — |
0.214
|
— | — | — | — | — | — | — |
No JSON data available for plots.