Hg_chrom2_TN10mRNA_3872
Organism: Heterodera glycines Gene Locus: chr2:8695856-8697215 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.078 | 0.903 | 0.799 | 1.269 | 1.783 | 0.355 | 1.987 | 1.177 | 1.432 | 0.953 | 2.727 | 1.38 | 0.637 | 1.149 | 0.615 | 0.76 | 0.652 | 1.528 | 1.169 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3679
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.760
|
0.138
|
0.006
|
0.357
|
0.093
|
0.065
|
0.168
|
0.011
|
0.092
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007114
|
1.000
|
1.000
|
Hsc_gene_4939.t1
|
Hsc_gene_4939.t1
|
— |
Q7QB13.2 Cyclin-C [Anopheles gambiae]
|
KAI1720263.1 cyclin-C [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006357|GO:0016538
|
GO:0008150_0.815|GO:0005575_0.785|GO:0009987_0.748|GO:0110165_0.712|GO:0065007_0.660|GO:0005622_0.659|GO:0050789_0.651|GO:0016020_0.630|GO:0050794_0.626|GO:0043226_0.602|GO:0043229_0.589|GO:0043227_0.569|GO:0008152_0.566|GO:0043231_0.553|GO:0044237_0.542|GO:0044238_0.540|GO:0043170_0.526|GO:0003674_0.519|GO:0032991_0.510
|
IPR006671+77-132+|IPR013763+46-173_183-265+|IPR031658+173-230+|IPR036915+8-171_173-278+|IPR043198+10-294+
|
SM00385+46-173_183-265+
|
PF00134+77-132+Cyclin,_N-terminal_domain|PF16899+173-230+Cyclin_C-terminal_domain
|
— |
PTHR10026+10-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
299-302
|
1.000
|
1-298
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.608
|
35754.170
|
7.078
|
4.000
|
28.477
|
14.901
|
49.007
|
50.993
|
15.894
|
12.583
|
38.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellowgreen
|
1068.776
|
2284.760
|
1057.482
|
789.758
|
687.494
|
640.853
|
1247.250
|
1343.777
|
880.641
|
996.149
|
946.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.341
|
-1.670
|
-0.312
|
-0.232
|
— |
0.972
|
0.963
|
— | — | — | — | — | — |
No JSON data available for plots.