Hg_chrom2_TN10mRNA_3873
Organism: Heterodera glycines Gene Locus: chr2:8697359-8699463 Feature type: polypeptideProtein Sequence
Length: 537
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.78 | 1.299 | 1.083 | 0.064 | 1.055 | 0.955 | 1.042 | 0.559 | 1.241 | 1.359 | 1.524 | 1.424 | 1.397 | 0.752 | 0.532 | 0.931 | 0.641 | 1.129 | 1.289 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.629
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.097
|
0.020
|
0.003
|
0.197
|
0.331
|
0.441
|
0.472
|
0.001
|
0.753
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007115
|
1.000
|
1.000
|
Hsc_gene_4940.t1
|
Hsc_gene_4940.t1
|
— |
P10852.1 Amino acid transporter heavy chain SLC3A2 [Mus musculus]
|
KAF7638290.1 Aamy domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0006865
|
GO:0008150_0.939|GO:0003674_0.838|GO:0005575_0.795|GO:0110165_0.794|GO:0016020_0.689|GO:0005622_0.522|GO:0071944_0.513|GO:0008152_0.512
|
IPR006047+100-438_116-187+|IPR017853+32-441+|IPR031984+29-91+|IPR042280+33-533+
|
SM00642+100-438+
|
PF00128+116-187+Alpha_amylase,_catalytic_domain|PF16028+29-91+Solute_carrier_family_3_member_2_N-terminus
|
— |
PTHR46673+33-533+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-537
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.792
|
59508.360
|
8.528
|
5.000
|
26.071
|
10.242
|
45.810
|
54.190
|
13.780
|
12.291
|
48.976
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
yellow
|
4061.162
|
3388.720
|
3898.383
|
4633.290
|
5527.153
|
7123.041
|
4905.502
|
5170.400
|
3157.660
|
2406.907
|
2728.658
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.314
|
0.358
|
0.222
|
0.381
|
-0.527
|
-0.567
|
— | — | — | — | — | — |
No JSON data available for plots.