SCN Proteipedia

Hg_chrom2_TN10mRNA_3875

Organism: Heterodera glycines Gene Locus: chr2:8713536-8717935 Feature type: polypeptide

Protein Sequence

Length: 823

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.721	0.904	0.486	0.503	1.134	1.028	0.593	1.154	1.08	1.281	0.847	2.144	1.654	0.771	1.587	1.337	1.115	0.865	1.402	0.786	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3682	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRVIKLFPFGRRRREA,RRKSAALMLTNELRRSSR,KKEMRKYKQFAMNRIRKT	15-39	0.996	64-92	1.000	—	—	0.000	—	—	0.077	0.172	0.164	0.125	0.235	0.502	0.388	0.014	0.744	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007116	1.000	1.000	Hsc_gene_4943.t1	Hsc_gene_4942.t1;Hsc_gene_4943.t1	—	Q18120.2 TWiK family of potassium channels protein 18 [Caenorhabditis elegans]	KAH7728074.1 Protein TWK-44 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005267\|GO:0016020\|GO:0071805	GO:0008150_0.950\|GO:0009987_0.873\|GO:0051179_0.846\|GO:0006810_0.845\|GO:0051234_0.845\|GO:0003674_0.811\|GO:0005575_0.785\|GO:0110165_0.785\|GO:0016020_0.758\|GO:0055085_0.725\|GO:0006811_0.722\|GO:0034220_0.693\|GO:0006812_0.691\|GO:0030001_0.691\|GO:0098660_0.667\|GO:0071944_0.666\|GO:0005215_0.663\|GO:0022857_0.663\|GO:0005216_0.661\|GO:0005886_0.661\|GO:0015075_0.661\|GO:0015267_0.661\|GO:0022803_0.661\|GO:0098655_0.653\|GO:0006813_0.648\|GO:0098662_0.644\|GO:0005261_0.630\|GO:0008324_0.630\|GO:0015318_0.626\|GO:0022890_0.618\|GO:0046873_0.618\|GO:0071805_0.614\|GO:0015079_0.591\|GO:0005267_0.590	IPR003280+134-559_320-348_441-450+\|IPR013099+306-363_410-480+	—	PF07885+306-363_410-480+Ion_channel	G3DSA:1.10.287.70:FF:000256+242-501+TWiK_family_of_potassium_channels	PTHR11003+134-559+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	634-779	2.000	1-633;780-823	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.813	94473.870	10.114	41.500	25.152	12.758	49.210	50.790	15.674	9.478	45.079

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	605.963	488.340	875.053	510.985	287.193	237.359	275.046	409.463	177.210	1361.893	854.172

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.612	—	-0.667	-0.863	-0.261	—	0.682	-0.430	-3.088	—	—	—	—

No JSON data available for plots.

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