Hg_chrom2_TN10mRNA_3879
Organism: Heterodera glycines Gene Locus: chr2:8721749-8722937 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 1.31 | 0.598 | 0.0 | 1.408 | 1.565 | 0.838 | 1.408 | 1.043 | 1.079 | 0.782 | 1.381 | 1.304 | 0.722 | 1.82 | 1.073 | 0.539 | 1.28 | 0.0 | 0.414 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3684
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.390
|
0.301
|
0.005
|
0.584
|
0.102
|
0.206
|
0.147
|
0.021
|
0.440
|
0.124
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007117
|
1.000
|
1.000
|
Hsc_gene_4945.t1
|
Hsc_gene_4945.t1
|
— |
O88952.2 Protein lin-7 homolog C [Mus musculus]
|
KAI1727381.1 PDZ domain (Also known as DHR or GLGF) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.888|GO:0110165_0.881|GO:0016020_0.745|GO:0008150_0.732|GO:0003674_0.683|GO:0005622_0.657|GO:0009987_0.609|GO:0005488_0.591|GO:0071944_0.581|GO:0043226_0.579|GO:0005886_0.563|GO:0005737_0.548|GO:0005515_0.533
|
IPR001478+100-181_102-184_103-180_110-184+|IPR017365+7-112_110-204+|IPR036034+97-190_97-212+|IPR036892+14-64+|IPR051109+24-204+
|
SM00228+110-184+
|
PF00595+103-180+PDZ_domain
|
G3DSA:2.30.42.10:FF:000039+97-207+Lin-7_homolog_B
|
PTHR14063+24-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-213
|
1.000
|
1-184
|
2dkr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
23853.050
|
10.205
|
8.000
|
28.638
|
8.920
|
51.174
|
48.826
|
16.901
|
11.737
|
47.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
812.264
|
1018.179
|
702.075
|
611.121
|
620.370
|
539.930
|
727.590
|
938.990
|
1117.218
|
781.396
|
925.320
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.765
|
-0.874
|
— | — | — |
0.441
|
0.693
|
-0.225
|
— | — | — | — | — |
No JSON data available for plots.