Hg_chrom2_TN10mRNA_3880
Organism: Heterodera glycines Gene Locus: chr2:8723234-8724156 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.64 | 1.279 | 0.455 | 0.517 | 2.083 | 0.897 | 0.774 | 1.25 | 0.556 | 0.473 | 0.985 | 2.059 | 1.667 | 0.962 | 1.327 | 1.357 | 0.656 | 1.136 | 1.923 | 0.882 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom2_TN10gene_3685
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
6-27
|
0.998
|
— | — |
0.000
|
— | — |
0.434
|
0.252
|
0.090
|
0.735
|
0.117
|
0.141
|
0.133
|
0.032
|
0.306
|
0.433
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007118
|
1.000
|
1.000
|
Hsc_gene_4946.t1
|
Hsc_gene_4946.t1
|
— |
P47033.1 Cell wall protein PRY3 [Saccharomyces cerevisiae S288C]
|
KAF7638286.1 SCP domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.837|GO:0110165_0.828|GO:0008150_0.764|GO:0003674_0.707|GO:0005488_0.642|GO:0016020_0.639|GO:0043226_0.625|GO:0043227_0.581|GO:0005622_0.565|GO:0071944_0.558|GO:0005737_0.530
|
IPR001283+39-193_57-75_104-117_126-142_173-186+|IPR014044+36-186_42-146+|IPR034113+36-183+|IPR035940+31-198_33-192+
|
SM00198+36-186+
|
PF00188+42-146+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+39-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
191-200
|
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
23062.750
|
6.037
|
-1.500
|
30.500
|
14.000
|
53.000
|
47.000
|
15.500
|
15.000
|
47.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
315.303
|
1212.354
|
462.063
|
177.119
|
90.311
|
56.370
|
110.986
|
531.585
|
119.305
|
299.675
|
222.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.622
|
-2.912
|
-1.274
|
-1.003
|
-0.665
|
0.987
|
3.143
|
-2.122
|
— | — | — | — | — |
No JSON data available for plots.