SCN Proteipedia

Hg_chrom2_TN10mRNA_3881

Organism: Heterodera glycines Gene Locus: chr2:8724159-8727038 Feature type: polypeptide

Protein Sequence

Length: 471

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.963	0.691	0.849	1.171	1.132	0.436	1.365	1.274	1.604	1.062	0.933	1.374	1.121	0.98	1.257	0.698	0.696	0.836	1.47	0.812	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom2_TN10gene_3686	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.628

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	RRGGAWFASFGRERNR	—	—	—	—	—	—	0.000	—	—	0.090	0.942	0.007	0.151	0.044	0.039	0.037	0.026	0.072	0.040

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007119	1.000	1.000	Hsc_gene_4947.t1	Hsc_gene_4947.t1	—	P25708.2 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Bos taurus]	KAI1724215.1 respiratory-chain NADH dehydrogenase 51 kd subunit domain-containing protein [Ditylenchus destructor]	No	-0.120

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0008137\|GO:0010181\|GO:0051287\|GO:0051539	GO:0005575_0.816\|GO:0110165_0.802\|GO:0003674_0.781\|GO:0008150_0.750\|GO:0016020_0.716\|GO:0009987_0.679\|GO:0005622_0.668\|GO:0005737_0.657\|GO:0003824_0.655\|GO:0008152_0.639\|GO:0043226_0.614\|GO:0043229_0.596\|GO:0044237_0.595\|GO:0043227_0.581\|GO:0043231_0.564\|GO:0044238_0.537\|GO:0009058_0.523\|GO:0016491_0.522\|GO:0044281_0.517	IPR001949+204-219_381-392+\|IPR011537+45-453+\|IPR011538+84-254+\|IPR019575+368-413_370-452+\|IPR037207+365-457_366-461+\|IPR037225+41-277_89-268+\|IPR050837+30-461+	SM00928+368-413+	PF01512+84-254+Respiratory-chain_NADH_dehydrogenase_51_Kd_subunit\|PF10589+370-452+NADH-ubiquinone_oxidoreductase-F_iron-sulfur_binding_region\|PF22461+278-360+SLBB_domain	G3DSA:1.20.1440.230:FF:000001+366-461+Mitochondrial_NADH_dehydrogenase_flavoprotein_1\|G3DSA:3.10.20.600:FF:000001+269-365+NADH_dehydrogenase_[ubiquinone]_flavoprotein_1,_mitochondrial\|G3DSA:3.40.50.11540:FF:000001+89-268+NADH_dehydrogenase_[ubiquinone]_flavoprotein_1,_mitochondrial	PTHR11780+30-461+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-471	9ce2_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.807	51703.580	7.954	10.000	26.327	11.253	40.127	59.873	14.862	11.465	50.531

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightcyan	2204.965	1761.339	1918.148	1857.777	2577.607	2205.204	1958.466	2125.681	1834.154	2869.522	2425.793

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.106	—	—	0.441	-0.210	—	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser